Pairwise Alignments

Query, 829 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  130 bits (326), Expect = 4e-34
 Identities = 112/424 (26%), Positives = 200/424 (47%), Gaps = 28/424 (6%)

Query: 420 DRRTGLPNRVVLRERLANFAANEHLIA---LKVTHFNQINEKYGYPVGDKLLRDLSEQFQ 476
           D  TGL NR    E+L  FA+    +A   L +  F  IN+  G+  GD++L  ++   Q
Sbjct: 431 DGITGLLNRQAFEEQLPEFASQARSLAVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQ 490

Query: 477 VFLDQKLAGQSGLYAIGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGLPNVDY 536
                 L  Q  L  IG  E+  V   +    ++     Q + Q   V+ +     N +Y
Sbjct: 491 ----SCLGPQELLARIGGDEFGLVICDRT-ALAVAQLLKQIIAQ---VSLQVLHDKNCNY 542

Query: 537 LSISLCAGLVSQGDFAEHSPDELL----LRAIEARRYAFNNNHHFCNAARLKVQESVRQE 592
             + L  G V+ G     +  ELL    +  I A+    N  H + +  +   + + ++ 
Sbjct: 543 -KVGLSIG-VAFGRAPYINAQELLKDADIACIAAKAKGTNQIHIYDDKDK---ELTYQRN 597

Query: 593 RLNWLSRVSRAVVRDDVVVYAQPICQ-ARSHIVASYECLVRIEDE-GEIILPGNFLPIIT 650
              W  R+++A+  +++++Y QPI     S      E L+RI++  G I+ P  F+    
Sbjct: 598 APKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIAAAE 657

Query: 651 DTHLYTRLSRQMITHTF-----NMMRHRPEAFSINLSPQDLMSERTLQHLEAAIKSVADP 705
              L   + +++I   F     N    +    SINLS   L +E  ++++    +    P
Sbjct: 658 RFKLMPEIDKEVIRKAFLWLSLNSQLWQDHCISINLSGNSLGAEGMVEYIAKQQQIFDIP 717

Query: 706 AR-VGLEVLESEQIKDYGRMIEVCNHFRTLGATIIVDDFGSGYSNIDEIVKLEPQVIKLD 764
           ++ V  E+ E+  I++  R +E+    R LG +  +DDFGSG+++   + +L    +K+D
Sbjct: 718 SQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELPVDYVKID 777

Query: 765 GSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDYLQGYFLGR 824
           G  ++N+  + K   I + +  +C+V+  +TVAEFV NQ +    + +G++Y QGY +GR
Sbjct: 778 GCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYAQGYAIGR 837

Query: 825 PSRL 828
           P  L
Sbjct: 838 PQPL 841