Pairwise Alignments

Query, 829 a.a., sensor domain-containing phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1077 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  124 bits (311), Expect = 3e-32
 Identities = 111/429 (25%), Positives = 196/429 (45%), Gaps = 40/429 (9%)

Query: 420  DRRTGLPNRVVLRERLAN-FAANEH------LIALKVTHFNQINEKYGYPVGDKLLRDLS 472
            D  TGLPNR +  ERL +     +H      ++ + +  F  IN+  G+  GD LL+D++
Sbjct: 636  DTLTGLPNRKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGDLLLQDVA 695

Query: 473  EQFQVFLDQKLAGQSGLYA-IGVGEWATVFRAKLDGKSIHSHFYQFVEQLEHVNFEPYGL 531
            ++ +      +AG++ L A IG  E+  +     +  +I     + +E L      P+ L
Sbjct: 696  KRLE-----NIAGKNDLIARIGGDEFVLILPRVTNEFAIEHMASRIIETLS----TPFNL 746

Query: 532  PNVDYLSISLCAGLVSQGDFAEHSPD-ELLLRAIEARRY----AFNNNHHFCNAARLKVQ 586
             N   + IS   G+   G + E   D   L R  E   Y    A  NN  +  +   +  
Sbjct: 747  -NEREIQISASFGI---GVYPEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMNQAM 802

Query: 587  ESVRQERLNWLSRVSRAVVRDDVVVYAQPICQARSHIVASYECLVRIEDEG-EIILPGNF 645
             +    R+    R+ RAV +D+  ++ QPI + ++  V S E L+R +D    +I P  F
Sbjct: 803  FA----RMELEQRLRRAVAQDEFTLHYQPIVEMKTGKVCSVEALIRWQDPDLGLIPPDQF 858

Query: 646  LPIITDTHLYTRLSRQMITHTFNMMRHRPEA-----FSINLSPQDLMSERTL---QHLEA 697
            + I  +T L   +   ++    + +R   +       +IN+S +  ++ R +   Q L+ 
Sbjct: 859  IGIAEETGLIEPMGEWVLNQAMHDLRQWQQLGLQLNVAINVSSRQCVNARGMGFDQVLQE 918

Query: 698  AI-KSVADPARVGLEVLESEQIKDYGRMIEVCNHFRTLGATIIVDDFGSGYSNIDEIVKL 756
               +   +P  V +E+ ES  + D    +      R LG+ I +DDFG+GYS++  + K 
Sbjct: 919  CFNRHHINPRNVHIEITESMLMGDASHCLSTLEAIRRLGSQIYIDDFGTGYSSLSYLKKF 978

Query: 757  EPQVIKLDGSLIRNIDQDVKQRRIAEQLVKLCQVLNAKTVAEFVHNQTVCRISEDMGVDY 816
               VIK+D S + N   +     + + +V + Q L  + VAE +  +    +  D+G  Y
Sbjct: 979  PISVIKIDRSFVENALSNNSNTNLVKAIVMMGQSLEMELVAEGIETEAQWNLLRDLGCHY 1038

Query: 817  LQGYFLGRP 825
             QGY + +P
Sbjct: 1039 AQGYLISKP 1047