Pairwise Alignments

Query, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., integrase/recombinase XerD (RefSeq) from Shewanella amazonensis SB2B

 Score =  174 bits (441), Expect = 2e-48
 Identities = 103/290 (35%), Positives = 167/290 (57%), Gaps = 4/290 (1%)

Query: 17  LERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLVMQGKRQG 76
           ++ F   L + +GLS  T   Y+  L     +L   G+     LDS  +R  +     QG
Sbjct: 32  IDAFLDELWSLQGLSDNTLSAYRTDLCQFDAFLTAKGIG-LLALDSLTLRDYLAYRFEQG 90

Query: 77  MKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLL-EVT 135
           M  +S A  LSSLR F    ++ G L  +P   + +P+  ++LP +L   ++ QLL E +
Sbjct: 91  MAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKLPKSLPGSLSEAQVEQLLAEPS 150

Query: 136 DDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQAQ 195
            DDP+  RD+A++EL+Y  GLR++ELV + + ++ L +G +R+IGKG KER V     AQ
Sbjct: 151 SDDPVECRDKAMLELLYATGLRVSELVGLGMSELGLRQGLVRIIGKGGKERLVPMGEVAQ 210

Query: 196 EWVGKWLKLRSQ--LADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLR 253
           + + ++L    Q  L   A   +F S  G +++ ++   R+  +  +  +++ +SPH LR
Sbjct: 211 DALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHRIKLYALRAGISTELSPHTLR 270

Query: 254 HSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPR 303
           H+FATH+L    +LR VQ LLGH +++TTQIYTH+    LA ++++ HPR
Sbjct: 271 HAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVARTRLADLHEKHHPR 320