Pairwise Alignments

Query, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  182 bits (463), Expect = 7e-51
 Identities = 107/290 (36%), Positives = 165/290 (56%), Gaps = 4/290 (1%)

Query: 17  LERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLVMQGKRQG 76
           +E F   L   KGLS +T + Y+  L    +YL + G +       A VR  +      G
Sbjct: 14  IEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQG-SSLLSTSQAEVRDYLALRVEHG 72

Query: 77  MKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLL-EVT 135
              +S A  LSSLR F  +L+ +  ++ +P   +  P+  R LP  L   ++ +LL E  
Sbjct: 73  FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132

Query: 136 DDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQAQ 195
            +DP+  RDRA++EL+Y +GLR++ELV + +  ++L +G +R++GKG+KER V F  QA 
Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192

Query: 196 EWVGKWLKLR--SQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLR 253
             +  +LK      L   A   +F SK G  ++ ++   R+  + Q+  +A H+SPH LR
Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTLR 252

Query: 254 HSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPR 303
           H+FATH+L    +LR VQ LLGH +++TTQIYTH+    LAQ++   HPR
Sbjct: 253 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302