Pairwise Alignments

Query, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., integrase, site-specific recombinase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  179 bits (454), Expect = 7e-50
 Identities = 101/291 (34%), Positives = 168/291 (57%), Gaps = 3/291 (1%)

Query: 17  LERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQ-VGLTHWTQLDSAWVRQLVMQGKRQ 75
           ++ F  YL  E+  S  T   Y + ++ + ++  +  G     +++   +R+ ++    +
Sbjct: 3   IKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMDR 62

Query: 76  GMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT 135
           G  ++S+  +LSSLRSF  +L+ +GE+  +P + ++ P+ ++ LP  L   EM +LL+ T
Sbjct: 63  GYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDDT 122

Query: 136 D--DDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQ 193
           D  +     RDR I+ + Y  G+RL+EL+ +D KDV+ S   ++V GK NK+R + F  +
Sbjct: 123 DFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGDE 182

Query: 194 AQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLR 253
            +E + +++ +R++       A FV + G R+    V   +     K A     SPH LR
Sbjct: 183 LKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHVLR 242

Query: 254 HSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRA 304
           H+FAT ML +   L AV+ELLGHE++ATT+IYTH  F+ L +VY QAHPRA
Sbjct: 243 HTFATTMLNNDAELGAVKELLGHESVATTEIYTHATFEELKKVYKQAHPRA 293