Pairwise Alignments

Query, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., site-specific tyrosine recombinase XerD from Bifidobacterium breve UCC2003

 Score =  179 bits (455), Expect = 6e-50
 Identities = 105/299 (35%), Positives = 163/299 (54%), Gaps = 11/299 (3%)

Query: 18  ERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLVMQGKRQGM 77
           E+F  ++  E+GL+  T   Y+  L     +L   G+T    +    V   +      G 
Sbjct: 11  EQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAALDADGE 70

Query: 78  KASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMAQLLEVT-- 135
            A S A RL+S+  F  F + +  + A+ A  V AP+    LP  L VDE+++LL+    
Sbjct: 71  SARSKARRLASIHEFHRFALAQHAVLADVAASVKAPKGASVLPDVLSVDEVSRLLDAAAV 130

Query: 136 --DDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVWFAGQ 193
               DP+ +RD+A++E MY  G R++E V  ++ D++L E  +R++GKG+K+R V     
Sbjct: 131 GGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLVPLGSY 190

Query: 194 AQEWVGKWLKL-------RSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASH 246
           A+  V  +L         RS        ALF++K G RIS +SV + +   G++  +   
Sbjct: 191 ARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGERAGITKP 250

Query: 247 ISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPRAR 305
           + PH LRHSFATH+++   ++R VQELLGH ++ TTQIYTH+  + L + Y  AHPRAR
Sbjct: 251 LHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR 309