Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., Diaminopimelate epimerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  174 bits (440), Expect = 3e-48
 Identities = 106/270 (39%), Positives = 143/270 (52%), Gaps = 5/270 (1%)

Query: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63
           HF KMHGLGNDF+V+D  T+ +  +PE +R LADRH+GVG DQ + +E        F   
Sbjct: 7   HFLKMHGLGNDFIVIDARTRPLDLTPERVRALADRHSGVGCDQFVTIEPARGGGVAF-MG 65

Query: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123
           + NADG  VE CGN +RC  R +  +      ++ + T  G +       +LI V+MG  
Sbjct: 66  LRNADGEIVESCGNASRCVGRLLLEE--REAESVLIETLGGMVEARRASGELIEVDMGPA 123

Query: 124 EFEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGPLLES 183
                +IP           L VG  +  C AVSMGNPH V  VDD     + T GPL+E 
Sbjct: 124 RLTWQEIPLAGAADTLHIELSVGPLSDPC-AVSMGNPHAVFFVDDADAIDLATWGPLIEH 182

Query: 184 HERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLL-DEQVRV 242
           H  FP R N   + + +   + +RV+ERG G T+ACG+GACA+    + +GL+      V
Sbjct: 183 HGLFPNRTNVEAVHLRADGRLRMRVWERGVGITRACGTGACASAVAAMRRGLIAGRTAEV 242

Query: 243 HLPGGELEIHWQGPGKPLYMTGPATHIYDG 272
            L GG L I W+     + MTG AT  Y G
Sbjct: 243 VLDGGTLGIVWRESDGHVLMTGSATLAYSG 272