Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., diaminopimelate epimerase DapF from Phaeobacter inhibens DSM 17395

 Score =  169 bits (427), Expect = 8e-47
 Identities = 99/271 (36%), Positives = 139/271 (51%), Gaps = 12/271 (4%)

Query: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64
           F KMHGLGNDF+VVD   Q    +P +   +A R  G+GFDQL V+      + D H   
Sbjct: 14  FMKMHGLGNDFVVVDARDQTWDITPAMAEGIAHRQMGIGFDQLTVITKG---DEDAHLTF 70

Query: 65  FNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVPE 124
           +NADGS    CGN  RC AR +  +  + K  + ++T +G ++       L +VNMG P+
Sbjct: 71  YNADGSTSAACGNATRCIARHLLDE--SGKTHLRLTTDRGLLLAEDAGNGLTSVNMGEPQ 128

Query: 125 FEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGPLLESH 184
            +   IP  A+  +   +   G  T    A  MGNPH    VD+     +   G   E H
Sbjct: 129 LDWQDIPL-AEDVDTLELPIEGAPT----ATGMGNPHCTFFVDNAEVIPLAEFGARYEHH 183

Query: 185 ERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLDEQVRVHL 244
             +PER N     VV+ D + +RV+ERG G T A GS +CA       +GL   +V++ L
Sbjct: 184 PLYPERTNVQVAHVVAPDHLRMRVWERGVGITLASGSSSCATAVAAARRGLTSRKVQIDL 243

Query: 245 PGGELEIHWQGPGKPLYMTGPATHIYDGQIS 275
            GG L I W+  G  ++MTGP  H+ DG  +
Sbjct: 244 DGGTLWIDWRKDG--VWMTGPTMHVADGHFT 272