Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 279 a.a., diaminopimelate epimerase (RefSeq) from Shewanella loihica PV-4

 Score =  394 bits (1013), Expect = e-115
 Identities = 191/275 (69%), Positives = 219/275 (79%), Gaps = 4/275 (1%)

Query: 4   HFSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYR 63
           HF+KMHGLGNDFMVVD +TQNV+FSPE I+RLADR+ G+GFDQLL+VE PYDP+ DFHYR
Sbjct: 3   HFTKMHGLGNDFMVVDGVTQNVYFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYR 62

Query: 64  IFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVP 123
           IFNADGSEVEQCGNGARCFARFV+ KGL NK  I VST  GKM L +E +  +TVNMG+P
Sbjct: 63  IFNADGSEVEQCGNGARCFARFVKSKGLINKQKIKVSTSSGKMTLRLERDGSVTVNMGIP 122

Query: 124 EFEPNKIPFRAKQSEKTYILRV----GEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGP 179
             EP++IPF AK++EKTY+L+     G  T  CGAVSMGNPH V  VDD+  A VE +G 
Sbjct: 123 VLEPSRIPFNAKKAEKTYLLQADMPEGMQTFLCGAVSMGNPHCVLEVDDVANADVERIGS 182

Query: 180 LLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLDEQ 239
           LL  HERFP+ VN GFMQVV  + I LRVYERGA ET ACGSGACAAVAVG LQG L  +
Sbjct: 183 LLTKHERFPKGVNVGFMQVVDANHIKLRVYERGAAETLACGSGACAAVAVGQLQGKLARR 242

Query: 240 VRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
           VRV LPGG L I+W+G GKPL+MTGPA H+YDGQI
Sbjct: 243 VRVDLPGGSLTINWEGEGKPLWMTGPAEHVYDGQI 277