Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., diaminopimelate epimerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  393 bits (1009), Expect = e-114
 Identities = 189/270 (70%), Positives = 216/270 (80%)

Query: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64
           F+KMHGLGNDFMVVD ITQNVFFSPE IRRLADR+ GVGFDQLL+VE PYDP+ DFHYRI
Sbjct: 4   FTKMHGLGNDFMVVDGITQNVFFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRI 63

Query: 65  FNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVPE 124
           FNADG EVE CGNGARCFARFVR KGLTNK  I VST  GKM L +E +  +TVNMGVP 
Sbjct: 64  FNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123

Query: 125 FEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGPLLESH 184
            EP++IPF+AK++EKTY+L+  + T  CGA SMGNPH V  V+D+  A V  +G LL  H
Sbjct: 124 LEPSQIPFKAKKAEKTYLLQTPQQTFLCGAASMGNPHCVLDVEDVANANVAEIGALLTKH 183

Query: 185 ERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLDEQVRVHL 244
           ERFP  VN GFMQVV+   I LRVYERGA ET ACG+GACAAV VG +QG LD+QV+V L
Sbjct: 184 ERFPRGVNVGFMQVVNAGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVQVDL 243

Query: 245 PGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
           PGG L I+W+G GKPL+MTGPA H+YDGQI
Sbjct: 244 PGGSLTINWEGEGKPLWMTGPAQHVYDGQI 273