Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., diaminopimelate epimerase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  110 bits (276), Expect = 3e-29
 Identities = 85/275 (30%), Positives = 123/275 (44%), Gaps = 17/275 (6%)

Query: 5   FSKMHGLGNDFMVVDC--ITQNVFFSPELIRRLADRHTGVGFDQLLVVE-APYDPESDFH 61
           F K+HG GNDF+ +D   +  +V   P+  R +  R  GVG D L+ ++ AP   E+D+ 
Sbjct: 10  FHKLHGCGNDFVFIDNRHLKLSVEAMPDWARSICRRAFGVGADGLVFLDTAPQGHEADYI 69

Query: 62  YRIFNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMG 121
           +  +NADGS  E CGN +RC A      G       H       +V  V +     V  G
Sbjct: 70  WHFYNADGSRAEMCGNASRCAAVLAVDLGFAGPR--HAFGTDAGIVHAVAD-----VEAG 122

Query: 122 VPEFEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGPLL 181
             + E      R +       L +         V+ G PH V   D +    +  LG  L
Sbjct: 123 YAKVELT----RPRDLAAGTTLELEGTPFTVHFVNTGVPHAVVFSDSVDGLDLRRLGAAL 178

Query: 182 ESHERF-PERVNAGFMQVVSRDEINLRVYERGA-GETQACGSGACAAVAVGILQGLLDEQ 239
             H  F P   NA F  ++ R  I+LR YERG   ET ACG+GA A   +    GL D  
Sbjct: 179 RYHPHFSPAGTNANFASIIDRRTIHLRTYERGVEDETYACGTGAAATAFIAHTLGLTDAS 238

Query: 240 VRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
           V V   GGE+ +        ++++G A  ++ G++
Sbjct: 239 VGVRTSGGEV-LGIDIEDGSIFLSGKAVRVFSGEM 272