Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., Diaminopimelate epimerase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  180 bits (456), Expect = 3e-50
 Identities = 106/271 (39%), Positives = 147/271 (54%), Gaps = 11/271 (4%)

Query: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64
           F KMHGLGNDF+V+D        S  L+  LADRH GVGFDQL V+ AP  PE+D H   
Sbjct: 14  FFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVI-APA-PEADAHLTF 71

Query: 65  FNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVPE 124
           +NADGS    CGN  RC AR +  +  T    + +ST +G ++     + L  VNMG P+
Sbjct: 72  YNADGSTSAACGNATRCIARMILDE--TGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQ 129

Query: 125 FEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGPLLESH 184
              +++P  A+  +   +   G  T    A  MGNPH    V D     ++T GP  E H
Sbjct: 130 TLWSEVPL-AEAMDTLELPIEGTPT----ATGMGNPHCTFFVADAEAIPLDTFGPRYEHH 184

Query: 185 ERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLDEQVRVHL 244
             +P+R N    Q+V  D I +RV+ERG G T A GS +CA       +GL   + R+ L
Sbjct: 185 PLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGRKTRIDL 244

Query: 245 PGGELEIHWQGPGKPLYMTGPATHIYDGQIS 275
            GG L I W+  G  ++MTGP   +++G+++
Sbjct: 245 DGGTLWIDWREDG--VWMTGPNMTVFEGRLT 273