Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., diaminopimelate epimerase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  194 bits (493), Expect = 2e-54
 Identities = 108/275 (39%), Positives = 155/275 (56%), Gaps = 21/275 (7%)

Query: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64
           F+KMHG GND++ VD     +    +     +  HTG+G D L+++ +    ++DF  RI
Sbjct: 7   FTKMHGAGNDYIYVDTTRYPIAAPEKKAIEWSKFHTGIGSDGLILIGS--SDKADFSMRI 64

Query: 65  FNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEED----LITVNM 120
           FNADGSE   CGNG+RC  ++V   GLT K  I + T+ G  VL +  E      +TV+M
Sbjct: 65  FNADGSEAMMCGNGSRCVGKYVYEYGLTAKKEITLDTRSGIKVLKLHVEGGKVTAVTVDM 124

Query: 121 GVPEFEPNKIPFRAKQSEKTYILRVGEHTLFCGA-VSMGNPHVVTVVDDIRTAAVETLGP 179
           G P  E   + F             G+   F    VSMGNPH+VT V+DI    +  +GP
Sbjct: 125 GSP-LETEAVDF-------------GDQFPFQSTRVSMGNPHLVTFVEDITQINLPEIGP 170

Query: 180 LLESHERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLDEQ 239
            LE++  FP+R N  F Q+V +D I +RV+ERG+G TQACG+GACA     +L GL   +
Sbjct: 171 QLENYHLFPDRTNVEFAQIVGKDTIRMRVWERGSGITQACGTGACATAVAAVLHGLAGRK 230

Query: 240 VRVHLPGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
             + + GG + I W+     + MTGPAT ++DG++
Sbjct: 231 CDIIMDGGTVTIEWEEATGHILMTGPATKVFDGEM 265