Pairwise Alignments

Query, 276 a.a., diaminopimelate epimerase from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., diaminopimelate epimerase (RefSeq) from Shewanella sp. ANA-3

 Score =  392 bits (1007), Expect = e-114
 Identities = 187/270 (69%), Positives = 216/270 (80%)

Query: 5   FSKMHGLGNDFMVVDCITQNVFFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRI 64
           F+KMHGLGNDFMVVD +TQNVFFSPE IRRLADR+ G+GFDQLL+VE PYDP+ DFHYRI
Sbjct: 4   FTKMHGLGNDFMVVDGVTQNVFFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRI 63

Query: 65  FNADGSEVEQCGNGARCFARFVRMKGLTNKYTIHVSTKKGKMVLNVEEEDLITVNMGVPE 124
           FNADG EVE CGNGARCFARFVR KGLTNK  I VST  GKM L +E +  +TVNMGVP 
Sbjct: 64  FNADGGEVENCGNGARCFARFVRNKGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123

Query: 125 FEPNKIPFRAKQSEKTYILRVGEHTLFCGAVSMGNPHVVTVVDDIRTAAVETLGPLLESH 184
            +P++IPF+AK++EKTY+L+  + T  CGA SMGNPH V  V+D+  A V  +G LL  H
Sbjct: 124 LDPSQIPFKAKKAEKTYLLQTPQQTFLCGAASMGNPHCVLDVEDVANANVAEIGALLTKH 183

Query: 185 ERFPERVNAGFMQVVSRDEINLRVYERGAGETQACGSGACAAVAVGILQGLLDEQVRVHL 244
           ERFP  VN GFMQVV+   I LRVYERGA ET ACG+GACAAV VG +QG LD+QVRV L
Sbjct: 184 ERFPRGVNVGFMQVVNSGHIKLRVYERGAAETLACGTGACAAVVVGQIQGKLDQQVRVDL 243

Query: 245 PGGELEIHWQGPGKPLYMTGPATHIYDGQI 274
           PGG L I+W+G GKPL+MTGPA H+YDGQI
Sbjct: 244 PGGTLTINWEGEGKPLWMTGPAQHVYDGQI 273