Pairwise Alignments

Query, 205 a.a., cytochrome c4 from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., Cytochrome c553-like protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  112 bits (279), Expect = 8e-30
 Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 16/189 (8%)

Query: 18  AQGSIEAGKAKSLTCAACHGADGNSPLT-IYPKLAGQHEKYLEKQLKELKLGASSGGKQG 76
           A G  EAG    + C ACHGA+G    +  +P++AGQ   YL KQL +   GA       
Sbjct: 69  AMGGAEAG-GSGMACIACHGAEGMGDGSGAFPRIAGQSGWYLYKQLIDYASGA------- 120

Query: 77  RYDPVMSAMAMPLSDEDIADLAAYYASM-----PISGNTTPEDVVAQGKVLYTAGDASRG 131
           R + VMS +A  L++ ++  ++A+YA++     P+ G+  PE ++  G  L   G A RG
Sbjct: 121 RPNKVMSGVAQRLTEREMEAVSAHYAAIDAPFRPVIGDIEPE-LLQWGGQLGAVGSAERG 179

Query: 132 LTACIACHGPRGNGTELSGFPKISGQHADYIKAQLEKFRSGTRANDMNEMMRDVAHKLTD 191
           + AC+ CHGP G G   S  P ++GQ+A+Y+  QLE +  G R ND   +M  +A K++ 
Sbjct: 180 IPACVNCHGPSGMGNPPS-VPYLAGQYANYMTHQLELWAEGVRDNDAMNVMSSIAEKMSS 238

Query: 192 ADIDILSKY 200
            D+  +S+Y
Sbjct: 239 EDMRAVSEY 247



 Score = 57.4 bits (137), Expect = 2e-13
 Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)

Query: 79  DPVMSAMAMPLSDEDIADLAAYYASMPISGNTTPEDVVAQGKVLYTAGDASRGL-TACIA 137
           DP + A+   L D+ +        ++ +    T +D++  G+++   G  + G   ACIA
Sbjct: 32  DPGIKALEARLEDDRVL------FNVEVQREVT-DDLLELGRLVAMGGAEAGGSGMACIA 84

Query: 138 CHGPRGNGTELSGFPKISGQHADYIKAQLEKFRSGTRANDMNEMMRDVAHKLTDADIDIL 197
           CHG  G G     FP+I+GQ   Y+  QL  + SG R    N++M  VA +LT+ +++ +
Sbjct: 85  CHGAEGMGDGSGAFPRIAGQSGWYLYKQLIDYASGARP---NKVMSGVAQRLTEREMEAV 141

Query: 198 SKYVGGL 204
           S +   +
Sbjct: 142 SAHYAAI 148



 Score = 43.1 bits (100), Expect = 5e-09
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 18  AQGSIEAGKAKSLTCAACHGADGNSPLTIYPKLAGQHEKYLEKQLKELKLGASSGGKQGR 77
           A GS E G      C  CHG  G       P LAGQ+  Y+  QL+    G         
Sbjct: 172 AVGSAERGIP---ACVNCHGPSGMGNPPSVPYLAGQYANYMTHQLELWAEGVRDNDAMN- 227

Query: 78  YDPVMSAMAMPLSDEDIADLAAYYASMPISG 108
              VMS++A  +S ED+  ++ YYA +  +G
Sbjct: 228 ---VMSSIAEKMSSEDMRAVSEYYARVRPAG 255