Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 922 a.a., DNA polymerase I (EC 2.7.7.7) from Pseudomonas fluorescens FW300-N2E2

 Score = 1011 bits (2615), Expect = 0.0
 Identities = 526/937 (56%), Positives = 672/937 (71%), Gaps = 29/937 (3%)

Query: 8   PLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGK 67
           PL+L+DGSSYLYRAFHA P   ++  +PT A+ GV+NM++S+ +Q+     AV+FDAKG 
Sbjct: 5   PLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDAKGG 64

Query: 68  TFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
           TFRD +Y +YKA+RP MPD++R Q+EPLH  ++A+G PLL ++ VEADDVIGTLAR ++ 
Sbjct: 65  TFRDALYAEYKANRPSMPDDMRVQIEPLHASVKALGFPLLCVDNVEADDVIGTLARSSAA 124

Query: 128 AGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKV 187
           A  PV+ISTGDKDMAQLVD +ITL+NTMT   LD  GV EKFG+ PE IIDYLALMGD  
Sbjct: 125 ADRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVAPEQIIDYLALMGDSS 184

Query: 188 DNIPGVPGVGEKTATALLQGI-GGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLS 246
           DNIPGVPG+G KTA+ LL G+ GGL  LYA LD +A L  RG+KT+A KLEE++  A LS
Sbjct: 185 DNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVATLPIRGAKTLAAKLEEHKEMALLS 244

Query: 247 YQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVTADEQTK 306
           Y+LATIK DV L+     L    PD + L  LY  L FKSW  E               K
Sbjct: 245 YELATIKTDVPLDVGLDDLQMGQPDHEKLAELYTLLEFKSWFEE----------NQRDAK 294

Query: 307 TSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNL 366
            +   +   A       E P A    ++Y+ IL++  F  WL KL +A LFAF TET+  
Sbjct: 295 RAGQEIVEVAE------EQPGAA--EAKYEVILDQARFDAWLAKLDKAPLFAFVTETNGG 346

Query: 367 DYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNL 426
           D   + LVG+SFAVA  EAAY+P+ H Y+  P+QL+RD V+  LKPLLE+ +K KVGQ+ 
Sbjct: 347 DAQHSQLVGLSFAVAPFEAAYIPLTHSYMGVPEQLDRDTVLKALKPLLENPNKLKVGQHA 406

Query: 427 KYDASVMARY--------GVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISF 478
           K++ +++A          G+ ++GI  DTML+SYV +S   +HDMDSLAL++L  S   F
Sbjct: 407 KFETNILANCAIDGDQNNGILVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGQSKTDF 466

Query: 479 EQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPL 538
           + +AGKG  QLTF+QI+LE A  YAAEDADVT RLHQ +   +     L  V  +IEMPL
Sbjct: 467 QDIAGKGVKQLTFDQISLELAGPYAAEDADVTFRLHQSLQEKLAATPSLGTVLNDIEMPL 526

Query: 539 VPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQ 598
           +PVL+RIER G ++D  LL  QS E+  +L  LE+ A+ +AG+ FNL SPKQL  IL+E+
Sbjct: 527 MPVLARIERQGALVDANLLGVQSVELGEKLVALEREAFAIAGEEFNLGSPKQLGVILYEK 586

Query: 599 MKLPVLQKTPSGTPSTNEEVLQELA-LDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPST 657
           + LPVL KT  G  ST E VL ELA  DYPLPKVL++YR L+KLKSTYTD+LP+ IN  T
Sbjct: 587 LGLPVLSKTAKGQASTAEAVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINSRT 646

Query: 658 GRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELR 717
           GRVHT+Y QAV ATGRLSS DPNLQNIP+R  EGRRIRQAF+AP G+K++A DYSQIELR
Sbjct: 647 GRVHTNYQQAVAATGRLSSIDPNLQNIPIRTAEGRRIRQAFIAPKGYKLLAADYSQIELR 706

Query: 718 IMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFG 777
           IMAHL+ D+ LL AFR   D+H ATAAE+ GV ++ V+ +QRR AKA+NFGLIYGMSAFG
Sbjct: 707 IMAHLAKDEGLLHAFRHNLDVHRATAAEVFGVELEAVTQDQRRSAKAINFGLIYGMSAFG 766

Query: 778 LAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRN 837
           LAKQ+G+ R ++Q Y+D+YF RYPGV+ YME TR++AA+ G+VETIFGRRL+LP+I ++N
Sbjct: 767 LAKQIGVDRKQSQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETIFGRRLYLPDINAKN 826

Query: 838 AMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKES 897
              RK AER AINAPMQGTAADIIKKAM+ VD W+   G    K+++QVHDELV EV+E 
Sbjct: 827 PALRKGAERTAINAPMQGTAADIIKKAMVAVDRWLTASGLD-AKVILQVHDELVLEVRED 885

Query: 898 SLSEIESKVQQLMESAAELAVPLVAEAGHGDNWEQAH 934
            + ++  +++Q M +AA L VPL+ E G G+NW++AH
Sbjct: 886 LVDQVREEIRQHMSAAATLDVPLLVEVGVGNNWDEAH 922