Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 914 a.a., DNA polymerase I from Pseudomonas stutzeri RCH2

 Score = 1083 bits (2802), Expect = 0.0
 Identities = 554/930 (59%), Positives = 699/930 (75%), Gaps = 23/930 (2%)

Query: 8   PLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGK 67
           PLIL+DGSSYLYRAFHA P   ++   PT A+ GV+NM+ S+ RQ+     AV+FDAKG 
Sbjct: 5   PLILVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRRQYPDSPFAVVFDAKGP 64

Query: 68  TFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
           TFRD +++ YK+HRPPMPD+LR QVEPLH  +RA+G+PLL +EGVEADDVIGTLARQ + 
Sbjct: 65  TFRDALFENYKSHRPPMPDDLRSQVEPLHASVRALGMPLLCVEGVEADDVIGTLARQCAA 124

Query: 128 AGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKV 187
            G  V+ISTGDKDMAQLV  ++TL+NTMT  V D EGV  KFG+ PELIID+LALMGDKV
Sbjct: 125 LGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKTKFGVGPELIIDFLALMGDKV 184

Query: 188 DNIPGVPGVGEKTATALLQGI-GGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLS 246
           DNIPGVPGVGEKTA  LL GI GGL+ LY NLD++A L  RG+K++  KL E+R  A +S
Sbjct: 185 DNIPGVPGVGEKTACGLLNGIPGGLKGLYDNLDQVAGLPIRGAKSLGAKLAEHRDAAFMS 244

Query: 247 YQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVTADEQTK 306
           Y+LATIK DV L+     L+   P R+AL++LY +L FK+WL +LL              
Sbjct: 245 YELATIKIDVPLDVEVGDLMPGEPHREALIALYRELEFKNWLDDLLR------------- 291

Query: 307 TSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNL 366
                   A  +    PE  +   + +QY+T+L + DF+ WL++LK AE FAFDTET ++
Sbjct: 292 ----EAKAAGENCEVQPEGCSIQAE-AQYETLLEQADFERWLDRLKTAECFAFDTETTSI 346

Query: 367 DYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNL 426
           D   A LVG+SFA+  G+AAY+P+ H Y+  PQQLE D V+A LKPLLED +K K+ Q+ 
Sbjct: 347 DAQRAELVGVSFAIEPGQAAYVPLRHSYMGVPQQLELDAVLAALKPLLEDPAKTKICQHG 406

Query: 427 KYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGK 486
           KYD +V+  YG+E+RG+  DTML+SYV ++   +HDMDSLAL++L    I FE +AGKG 
Sbjct: 407 KYDMNVLMHYGIEMRGMTFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGA 466

Query: 487 NQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIE 546
            QLTF+QIA+E+A  YAAEDADVTLRLHQ +   +EQ   L +V  EIEMPLVPVL+RIE
Sbjct: 467 KQLTFDQIAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIE 526

Query: 547 RTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQK 606
           R G ++D  LL  QS E+  +L QLE+ A+E+AG+ FNL SPKQL  IL++++  PV+ K
Sbjct: 527 RNGALVDAQLLGQQSVELGDKLVQLEREAFEIAGEEFNLGSPKQLCAILYDKLGCPVISK 586

Query: 607 TPSGTPSTNEEVLQELA-LDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYH 665
           T  G PST E VL ELA  DYPLPKV++++R L+KLK TYTDKLP+ INP TGR+HTSYH
Sbjct: 587 TAGGQPSTAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYH 646

Query: 666 QAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGD 725
           QAVTATGRLSS+DPNLQNIP+R  EGRRIRQAFVA  G+K++A DYSQIELRIMAHL+ D
Sbjct: 647 QAVTATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQD 706

Query: 726 QALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIP 785
             LL AF++  D+H ATAAE+ GVP++QVS++QRR AKA+NFGLIYGMSAFGLAKQ+ + 
Sbjct: 707 AGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVG 766

Query: 786 RGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAE 845
           R EAQEY+D+YF RYPGV+ YME TR++AA+ GYVET+FGRRL+LPEI S+N   RK AE
Sbjct: 767 RKEAQEYIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAE 826

Query: 846 RAAINAPMQGTAADIIKKAMLLVDEWIEREG-DGRVKLLMQVHDELVFEVKESSLSEIES 904
           R AINAPMQGTAADIIK+AM+ VD W++  G D RV  ++QVHDELV EV+E  + ++  
Sbjct: 827 RTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARV--ILQVHDELVLEVREDLVEQVRE 884

Query: 905 KVQQLMESAAELAVPLVAEAGHGDNWEQAH 934
            +  LM  AA+L VPL+ EAG G+NW++AH
Sbjct: 885 AICPLMSGAAQLDVPLLVEAGVGNNWDEAH 914