Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 953 a.a., DNA polymerase I from Synechococcus elongatus PCC 7942

 Score =  573 bits (1478), Expect = e-167
 Identities = 367/972 (37%), Positives = 542/972 (55%), Gaps = 67/972 (6%)

Query: 6   DNPLIL-IDGSSYLYRAFHAYP-----GTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMA 59
           D+PL+L +DG S  +R+++A+      G  +   IPT+  +G +  +  +M Q     +A
Sbjct: 4   DSPLLLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPKALA 63

Query: 60  VIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIG 119
           + FD  G TFR E  + YKA+R   P++ +   + L  +++ + LP+L   G EADD++G
Sbjct: 64  IAFDLGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGYEADDLLG 123

Query: 120 TLARQASQAGMPVLISTGDKDMAQLVDDN-----ITLINTMTNVV-------LDREGVIE 167
           T+A++ ++AG  V I +GD+D+ QLVD       + L NT            +D   VI+
Sbjct: 124 TVAQRGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREIDPAAVID 183

Query: 168 KFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFR 227
           K G+PPE +ID+ AL GD  DNIPGV G+G KTA  LLQ  G L+ +Y NL+ I      
Sbjct: 184 KLGVPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEAI------ 237

Query: 228 GSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKL---AF 284
               + +KLE +R  A  S +LA I  D+ L            D   ++    KL   AF
Sbjct: 238 -KPAVRKKLESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQAF 296

Query: 285 KSWLTELLDGGTGIVTADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDF 344
           +  +  L     G     E     S+   TA   AA  P  P   +      T     D 
Sbjct: 297 RRQVDRLQQLFGGQPPTVEALSDESLDFWTAEETAAQQPRWP--QLQPQIITTAAALTDL 354

Query: 345 QLWLEKLKQAE-LFAFDTETDNLDYMVANLVGMSFAVAE--GEAAYLPVAHDYLDAPQQL 401
              LE+    E + A+DTET +LD  +A LVG+  A  E   + AY+P+ H+     +QL
Sbjct: 355 VTLLEQRDSPEAIVAWDTETTDLDPRLAQLVGIGCAWGEEPDQLAYIPLGHE---EGEQL 411

Query: 402 ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKH 461
               V+  L+P+LE +   K  QN K+D  ++   G+EL G+  DTML SY+ N   G H
Sbjct: 412 PLQTVLTALRPILESDRHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNPSLG-H 470

Query: 462 DMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLI 521
            +D+LA R+L+    S+  +  KGK   T  Q+A+   AQY   D  V  RL   +   I
Sbjct: 471 SLDALADRWLKLQTRSYSDLVPKGK---TIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGI 527

Query: 522 EQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQ 581
            +   L+ +   +E+PL  VL+ +E  G+ ID+  L+  S+ +   LD+LE  A+ LAG 
Sbjct: 528 AESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGD 587

Query: 582 PFNLSSPKQLQTILFEQMKLPVLQ--KTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLA 639
            FNL SPKQL  +LFE++ L V +  KT +G  ST+  VL++L  D+P+  +++E+R LA
Sbjct: 588 RFNLGSPKQLSELLFEKLGLNVKKSRKTKTGY-STDAAVLEKLQGDHPIIDLILEHRTLA 646

Query: 640 KLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFV 699
           KLKSTY D LP ++  + GR+HT ++QAVTATGRLSS++PNLQNIP+R E  R+IR+AF+
Sbjct: 647 KLKSTYVDALPSLV-AADGRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFL 705

Query: 700 APHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQR 759
              GW + A DYSQIELRI+AHLS +  LL+A+R G D+H  TA+ +     ++++SE+R
Sbjct: 706 PREGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLF--DREEITSEER 763

Query: 760 RRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGY 819
           R  K +NFG+IYGM A   A++ G    EAQ ++D++++RYP V  Y++    +A   GY
Sbjct: 764 RIGKIINFGVIYGMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGY 823

Query: 820 VETIFGRRLHL--------------PEITSRNAMRRKAAE----RAAINAPMQGTAADII 861
           VET+ GRR +               PE    + +R    E    RAA NAP+QG++ADII
Sbjct: 824 VETVLGRRRYFDFEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAPIQGSSADII 883

Query: 862 KKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAAELAVPLV 921
           K AM+ +   ++     + ++L+QVHDELV E+       +  ++QQ ME A +L VPL 
Sbjct: 884 KVAMVQLQALLQ---SYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQAVQLTVPLA 940

Query: 922 AEAGHGDNWEQA 933
            E   G NW +A
Sbjct: 941 VELHAGHNWMEA 952