Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 923 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score = 1162 bits (3007), Expect = 0.0
 Identities = 586/935 (62%), Positives = 726/935 (77%), Gaps = 13/935 (1%)

Query: 1   MAHIPDNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMMRQFASDRMA 59
           M  I  NPLIL+DGSSYLYRA++A P  T S GE  T A+YGVVNM+RS++ ++   +MA
Sbjct: 1   MPDIASNPLILVDGSSYLYRAYYAPPHLTNSKGEA-TGAVYGVVNMLRSLLSRYRPTQMA 59

Query: 60  VIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIG 119
           V+FDAKG TFR+EMY +YKAHRPPMPD+LR Q+ PLH++I+A+G+PL++I GVEADDVIG
Sbjct: 60  VVFDAKGPTFRNEMYQEYKAHRPPMPDDLRSQIAPLHRIIKALGIPLISIPGVEADDVIG 119

Query: 120 TLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDY 179
           T+A QA   G  VLISTGDKDMAQLV+++ITLINTMT+ +L  E V  KFG+ PELIID 
Sbjct: 120 TIAIQAGNEGRSVLISTGDKDMAQLVNEHITLINTMTDTILGPEEVATKFGVGPELIIDL 179

Query: 180 LALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEEN 239
           LA+MGDK DNIPG+PGVGEKTA A+L G GG+  L A  D +  LGFRG+KTMA K+ +N
Sbjct: 180 LAMMGDKADNIPGLPGVGEKTALAMLTGAGGVAKLLAEPDCVTDLGFRGAKTMAAKIRDN 239

Query: 240 RGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIV 299
               +LSY+LATIK DV LE+    L    P+RD L++ YG++ FK WL E+LD  + + 
Sbjct: 240 AEMLELSYKLATIKTDVTLEQDWHQLSLSEPNRDELIACYGEMEFKRWLAEVLDNKSPLG 299

Query: 300 TADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAF 359
           T     + +  T            ESPAA +  +QY T+L E +   WL+KL +AEL A 
Sbjct: 300 TKAAAPQANQETT-----------ESPAAAVIETQYHTLLTESELDAWLDKLSKAELIAV 348

Query: 360 DTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESK 419
           DTET +LDYM A LVG+SFA+  G+AAYLP+ HDY  AP QL R+  +A+LKPLLE+   
Sbjct: 349 DTETTSLDYMQAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLPREATLAKLKPLLENPDI 408

Query: 420 AKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFE 479
            KVGQNLKYD SV+A  G++L+G+  DTML+SYV+NSV  +HDMD LAL++L H  ISFE
Sbjct: 409 KKVGQNLKYDMSVLANAGIQLKGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFE 468

Query: 480 QVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLV 539
           ++AGKG  QLTFNQIALE+AA YAAEDAD+TLRLHQ + P + ++  LE V+ E+E+PL+
Sbjct: 469 EIAGKGAKQLTFNQIALEQAAPYAAEDADITLRLHQHLWPRLSKEEGLESVFTELELPLI 528

Query: 540 PVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQM 599
            VLS IER GV+ID MLL  QS+E+A ++D+LEQ+A+E+AG+PFNLSS KQLQ + F ++
Sbjct: 529 EVLSDIERRGVLIDSMLLGQQSEELARKIDELEQHAHEIAGEPFNLSSTKQLQELFFTKL 588

Query: 600 KLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGR 659
             PV++KTP G PST EEVL ELALDYPLPK+++E+R L KLKSTYTDKLP MIN  TGR
Sbjct: 589 GYPVIKKTPKGAPSTAEEVLVELALDYPLPKIILEHRSLTKLKSTYTDKLPLMINGRTGR 648

Query: 660 VHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIM 719
           VHTSYHQA  ATGRLSS+DPNLQNIP+R EEGRRIRQAFVAP G +I+A DYSQIELRIM
Sbjct: 649 VHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYSQIELRIM 708

Query: 720 AHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLA 779
           AHLS D+ LL AF +GKDIH ATAAE+  V  + V+SEQRRRAKAVNFGLIYGMSAFGLA
Sbjct: 709 AHLSQDEGLLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLA 768

Query: 780 KQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAM 839
           +QL IPR EAQ Y+D YF+RYPGV++YME+TR+ A++ GYV T+FGRRL+LPEI  RNAM
Sbjct: 769 RQLDIPRNEAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPEIRDRNAM 828

Query: 840 RRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSL 899
           RR+AAERAAINAPMQGTAADIIKKAM+ +  WI+ E  G ++++MQVHDELVFEV     
Sbjct: 829 RRQAAERAAINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVFEVDADKA 888

Query: 900 SEIESKVQQLMESAAELAVPLVAEAGHGDNWEQAH 934
             ++ KV +LM +AA L VPL+AEAG GDNW+QAH
Sbjct: 889 DALKEKVCELMAAAASLDVPLLAEAGLGDNWDQAH 923