Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 924 a.a., DNA polymerase A (NCBI) from Rhodospirillum rubrum S1H

 Score =  669 bits (1727), Expect = 0.0
 Identities = 389/949 (40%), Positives = 557/949 (58%), Gaps = 54/949 (5%)

Query: 9   LILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGKT 68
           L L+DGS Y++RA+H+ P        P NA+YG   M+  ++    +D +AVIFD    +
Sbjct: 7   LYLVDGSGYIFRAYHSLPPMTRTDGTPVNAVYGFTAMLMKLLADMDADHLAVIFDKARVS 66

Query: 69  FRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQA 128
           FR+E+Y  YKA RPP P++L  Q   + + +RA  +P +  +G EADD+I T A++A   
Sbjct: 67  FRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDLIATYAKRARAE 126

Query: 129 GMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVD 188
           G  V + + DKD+ QLV + + L + M N  +    V EKFG+ P+ +ID  AL GD VD
Sbjct: 127 GAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPDKVIDVQALAGDAVD 186

Query: 189 NIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQ 248
           N+PGVPG+G KTA  L+   G LE L A   +I     R      Q L ++   A++S Q
Sbjct: 187 NVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRR------QSLLDHAEAARISLQ 240

Query: 249 LATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVTADEQTKTS 308
           L  ++ DVE+ E+        PD + L     +  F+S L  +                 
Sbjct: 241 LVRLRDDVEVSETLADFATAEPDAEVLAGFLAENGFRSLLARV----------------- 283

Query: 309 SVTVSTAATHAAA--IPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNL 366
                TA  HA A   P+  AA  D   Y  +    +  +W+ K + A L A DTETD+L
Sbjct: 284 -----TAVAHAKAGTTPQPAAAPAD-DDYVLVNTLAELGVWIAKARAAGLVAIDTETDSL 337

Query: 367 DYMVANLVGMSFAVAEGEAAYLPVAH--------DYLDAPQQL----ERDWVIAQLKPLL 414
               A LVG+S A+  G A Y+P AH        D+  A   +    ++   +A L  LL
Sbjct: 338 KARRATLVGVSLAITPGRACYIPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLL 397

Query: 415 EDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHS 474
            D    KVG NLK+D  V+A  G+       DTM+ SYV +     H MD LA   L   
Sbjct: 398 RDPGVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRR 457

Query: 475 CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREI 534
            I+FE+V GKGK Q+TF+Q+ L++A  YAAEDADVTLRL+  +   + ++  + +V+  +
Sbjct: 458 TITFEEVCGKGKGQITFDQVPLDKAVAYAAEDADVTLRLYLLLRDRLLKE-HMVRVHETL 516

Query: 535 EMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTI 594
           + P+V +L+ +E  GV +D + L A S + A R+  LE   + LAG  FN++SPKQL  +
Sbjct: 517 DRPMVRILTDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEV 576

Query: 595 LFEQMKLPVLQKT-PSGTPSTNEEVLQELALD-YPLPKVLIEYRGLAKLKSTYTDKLPKM 652
           LFE+M L   +K+  +G  ST+ +VL +LA + + LP  ++++R  AKLK TYTD L   
Sbjct: 577 LFEEMSLTGGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAE 636

Query: 653 INPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYS 712
           I+  TGRVHT+Y   VTATGRLSS DPNLQNIPVR+E GR+IR+AF+A  G  +++ DYS
Sbjct: 637 IDERTGRVHTTYGLTVTATGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYS 696

Query: 713 QIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYG 772
           QIELR++AH++G  AL  AF +GKDIHA TA+++ GVP++ +    RR+AKA+NFG+IYG
Sbjct: 697 QIELRLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYG 756

Query: 773 MSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPE 832
           +SA GLA+QLG+ R EA  ++  YF R+P +  YME  +  A  +G+V T FGRR+ +P 
Sbjct: 757 ISAHGLAQQLGVGRPEAAAFITAYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPG 816

Query: 833 ITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVF 892
           I  +N   R  AER AINAP+QG AADIIK+AM+ +   +E+ G    ++L+QVHDEL+F
Sbjct: 817 IQDKNPAARAFAERQAINAPIQGGAADIIKRAMIALPPALEQAGLA-TRMLLQVHDELIF 875

Query: 893 EVKESSLSEIESKVQQLMESA-------AELAVPLVAEAGHGDNWEQAH 934
           E  E+      + V+++ME+A        E  VPL  + G   +W +AH
Sbjct: 876 EAPEAEAETAAALVKRVMETAVTLTDDQGERTVPLEVDTGIAASWAEAH 924