Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 916 a.a., DNA polymerase I from Rhodanobacter denitrificans MT42

 Score =  966 bits (2496), Expect = 0.0
 Identities = 495/926 (53%), Positives = 651/926 (70%), Gaps = 13/926 (1%)

Query: 9   LILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGKT 68
           LILIDGSSYLYRAFHA P   +     T A++GVVNM+R+ ++    D +A + DA G T
Sbjct: 4   LILIDGSSYLYRAFHALPPLSNARGEATGALFGVVNMLRATLKA-KPDYLAFVSDAPGPT 62

Query: 69  FRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQA 128
           FRD +Y QYKA+RPPMPD+LR QVEP+  ++ A+G P+L + GVEADDVIGTLA QA   
Sbjct: 63  FRDALYAQYKANRPPMPDDLRSQVEPMLAIVAALGFPILRVGGVEADDVIGTLALQAQAQ 122

Query: 129 GMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVD 188
           G+ V +ST DKDMAQLV  ++TL+NTM+N VLD  GV+EKFG+ P  IID+LAL GD +D
Sbjct: 123 GIEVEVSTSDKDMAQLVGSHVTLVNTMSNTVLDSAGVMEKFGVMPAQIIDFLALTGDAID 182

Query: 189 NIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQ 248
           NIPGVP  G KTA   L   G L+ + A+ D+I      G K + + L        LS Q
Sbjct: 183 NIPGVPKCGPKTAARWLGEYGSLDGVIAHADRI------GGK-IGESLRTTLPQLPLSRQ 235

Query: 249 LATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIVTADEQTKTS 308
           LATIK DV LE  P  L ++  D + L  LY +  FK+ L EL    +    A       
Sbjct: 236 LATIKTDVPLEFGPTDLARREADVEQLRELYTRYEFKAALKEL---DSAAEPAGAHPVHD 292

Query: 309 SVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDY 368
           ++      +H               +Y+ +  +  F  WLE+L+ AEL AFDTET +LD 
Sbjct: 293 ALRAEQHQSHRVQGALLQTEFSGPGEYELVTTQARFDAWLEELRGAELIAFDTETTSLDA 352

Query: 369 MVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESKAKVGQNLKY 428
           M A++VG+SFAV  G A YLP+ HDY   P QL+RD V+  LKP+ ED ++ K+GQ+ KY
Sbjct: 353 MRADIVGLSFAVEPGRACYLPLGHDYPGVPPQLDRDDVLRALKPIFEDATRPKLGQHAKY 412

Query: 429 DASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQ 488
           D ++++ YG+ ++G++HD+ML+SYV+N+   +HDMDSLA ++L +  + +E VAGKG  Q
Sbjct: 413 DINILSHYGIAVQGLKHDSMLESYVWNATATRHDMDSLAKKYLGYDTVKYEDVAGKGARQ 472

Query: 489 LTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIERT 548
           ++F+Q+ L+ A +YAAEDADVTLRLH  + P +E    L +VY EIE+PLVPVL+ +ER 
Sbjct: 473 ISFSQVELDTACRYAAEDADVTLRLHHALWPKLESVPALRRVYEEIEIPLVPVLAEMERR 532

Query: 549 GVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTP 608
           GV+ID   L  QSQ++  R+ +L+Q +Y LAG+ FNL SPKQLQ +LF+++ L    KTP
Sbjct: 533 GVLIDGDELRRQSQQLGRRMLELQQQSYALAGREFNLDSPKQLQAVLFDELHLEAKLKTP 592

Query: 609 SGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAV 668
           +G PSTNEE L+ +A  + LP+++++YRGLAKL+STYTDKL  ++NP TGRVHTSYHQ  
Sbjct: 593 TGQPSTNEEALEAIADTHELPRLILDYRGLAKLRSTYTDKLSAIVNPRTGRVHTSYHQGS 652

Query: 669 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 728
            ATGR+SS+DPNLQNIPVR EEGRRIRQAF+AP GW++MA DYSQIELRIMAHLSGD+ L
Sbjct: 653 VATGRISSSDPNLQNIPVRTEEGRRIRQAFIAPPGWRVMAADYSQIELRIMAHLSGDEGL 712

Query: 729 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGE 788
           L AFR+G D+H ATAAE+ G+  ++VS+ QRR AKA+NFGL+YGMSAFGLA+QLG+ R E
Sbjct: 713 LKAFREGGDVHRATAAEVFGLKPEEVSANQRRAAKAINFGLMYGMSAFGLARQLGVDRAE 772

Query: 789 AQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAA 848
           A +YM +YF RYPGV  +ME TR RA   GYVETIFGRRL+L  + +RN   R+ AERAA
Sbjct: 773 AGDYMARYFARYPGVHAFMEATRERAHHDGYVETIFGRRLYLENLNARNQALRQGAERAA 832

Query: 849 INAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQ 908
           +NAPMQG+AADIIK+AM+ V  W++   D    +LMQVHDELVFEV+  ++  + + V  
Sbjct: 833 VNAPMQGSAADIIKRAMIAVAAWLKDRDDAH--MLMQVHDELVFEVRADAVDTVRTAVVA 890

Query: 909 LMESAAELAVPLVAEAGHGDNWEQAH 934
            M  AAELAVPL+ + G G NW++AH
Sbjct: 891 RMSGAAELAVPLLVDVGVGANWDEAH 916