Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 930 a.a., DNA polymerase I (RefSeq) from Shewanella loihica PV-4

 Score = 1181 bits (3054), Expect = 0.0
 Identities = 597/935 (63%), Positives = 730/935 (78%), Gaps = 20/935 (2%)

Query: 1   MAHIPDNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMMRQFASDRMA 59
           M +I +NPLIL+DGSSYLYRA++A P  T S GE  T A+YGV+NM+RS++ Q+   +MA
Sbjct: 15  MPNIAENPLILVDGSSYLYRAYYAPPHLTNSKGEA-TGAVYGVINMLRSLLNQYKPTQMA 73

Query: 60  VIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIG 119
           V+FDAKGKTFR+EMY +YKAHRPPMPD+LR Q+EPLH++IRA+GLPL+ I GVEADDVIG
Sbjct: 74  VVFDAKGKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRIIRALGLPLVCIPGVEADDVIG 133

Query: 120 TLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDY 179
           T+ARQASQ G  VLISTGDKDMAQLVDD ITLINTMTN +L  + V EKFG+ PELIID 
Sbjct: 134 TIARQASQEGRAVLISTGDKDMAQLVDDKITLINTMTNTILGPDEVSEKFGVGPELIIDL 193

Query: 180 LALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEEN 239
           LAL GDK DNIPG+PGVGEKTA A+LQG+GG+EA+ AN +K+  LGFRG+KTM  K+ E+
Sbjct: 194 LALQGDKADNIPGLPGVGEKTALAMLQGVGGVEAILANPEKMPELGFRGAKTMPAKIAEH 253

Query: 240 RGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIV 299
               KLSY+LATIKCDVELE+    L  Q  DRD L+  YG++ FK WL E+LD  +   
Sbjct: 254 GDMLKLSYELATIKCDVELEQDWHQLNIQGADRDELIKCYGEMEFKRWLAEVLDNKSSAS 313

Query: 300 TADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAF 359
           + +E                    E PA     +QY TIL  +    WL+ L  A LFA 
Sbjct: 314 SQEEAD------------------EVPAPQAIDTQYDTILTWEALDEWLKALAAAPLFAL 355

Query: 360 DTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESK 419
           DTET +L+YM A +VG+SFA+  G+AAYLP+AHDY DAP+QL+ + V+A+LKPLLED S 
Sbjct: 356 DTETTSLNYMEAKMVGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAKLKPLLEDPSL 415

Query: 420 AKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFE 479
            KVGQNLKYD S++A  G+ L+G+  DTML+SYV+NSV  KH+MD LAL++L H  ISFE
Sbjct: 416 LKVGQNLKYDMSILANVGIALKGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFE 475

Query: 480 QVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLV 539
           ++AGKG  QLTFNQI LE AA YAAEDAD+TLRLHQ + P +++ ++L  V+ +IE+PLV
Sbjct: 476 EIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLQKASELASVFTDIELPLV 535

Query: 540 PVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQM 599
            +LS+IER GV+ID MLL  QS E+A ++D+LEQ AYE+AG+PFNL S KQLQ + FE++
Sbjct: 536 SILSQIERQGVLIDSMLLGQQSDELARKIDELEQKAYEIAGEPFNLGSTKQLQALFFEKL 595

Query: 600 KLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGR 659
             PVL+KTP G PST EEVL ELALDYPLPK+++E+R L+KLKSTYTDKLP M++  TGR
Sbjct: 596 GYPVLKKTPKGAPSTAEEVLVELALDYPLPKIILEHRSLSKLKSTYTDKLPLMVDGKTGR 655

Query: 660 VHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIM 719
           VHTSYHQA+ ATGRLSS++PNLQNIP+R EEGRRIR AFVAP G KI+A DYSQIELRIM
Sbjct: 656 VHTSYHQAIAATGRLSSSEPNLQNIPIRTEEGRRIRHAFVAPEGRKILAADYSQIELRIM 715

Query: 720 AHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLA 779
           AHLS D+ LL AF +GKDIH ATAAE+  V   +V+SEQRRRAKAVNFGLIYGMSAFGLA
Sbjct: 716 AHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMSAFGLA 775

Query: 780 KQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAM 839
           +QL IPR EAQ+Y+D YF+RYPGV++YMEDTR+ AA+ GYV T++GRRL+LP I  RNAM
Sbjct: 776 RQLDIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAM 835

Query: 840 RRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSL 899
           RR+AAERAAINAPMQGTAADIIKKAM+ + +WIE E  G + ++MQVHDELVFEV     
Sbjct: 836 RRQAAERAAINAPMQGTAADIIKKAMINIAQWIETETQGEITMIMQVHDELVFEVDADKA 895

Query: 900 SEIESKVQQLMESAAELAVPLVAEAGHGDNWEQAH 934
             ++ KV +LM  AA L V L+AEAG GDNWEQAH
Sbjct: 896 DSLKLKVCELMAQAASLDVELLAEAGIGDNWEQAH 930