Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 922 a.a., DNA polymerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1160 bits (3001), Expect = 0.0
 Identities = 581/935 (62%), Positives = 724/935 (77%), Gaps = 14/935 (1%)

Query: 1   MAHIPDNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMMRQFASDRMA 59
           M  I +NPL+L+DGSSYLYRA++A P  T S GE  T A+YGVVNM+RS++ ++    +A
Sbjct: 1   MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEA-TGAVYGVVNMLRSLLSRYQPSHIA 59

Query: 60  VIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIG 119
           V+FDAKGKTFR+++Y +YKAHRPPMPD+LR Q+EPLH++IRA+GLPL++I GVEADDVIG
Sbjct: 60  VVFDAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIG 119

Query: 120 TLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDY 179
           T+AR+AS+    VLISTGDKDMAQLVD+NITLINTMT+ ++  E V  K+G+ P+ IID+
Sbjct: 120 TIARRASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDF 179

Query: 180 LALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEEN 239
           LALMGDK DNIPG+PGVGEKTA A+L G G +  L A  +K++ L FRGSKTMA K+ +N
Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAKIIDN 239

Query: 240 RGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGTGIV 299
               +LSY+LATIK DVELE+    L  +  DRD L+  YG++ FK WL E+LD      
Sbjct: 240 ADMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEILDN----- 294

Query: 300 TADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAF 359
                   +  T++TA T      ++  +    +QY TIL E     W+ KLKQA LFA 
Sbjct: 295 -------KAPATIATATTTVETEADTTPSLALETQYDTILTEAQLDEWIAKLKQASLFAV 347

Query: 360 DTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLLEDESK 419
           DTET +LDYMVA LVGMSFAV  G+AAYLP+AHDY+ APQQL++ + + +L+P+LED   
Sbjct: 348 DTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQFALEKLRPILEDAKL 407

Query: 420 AKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFE 479
            KVGQNLKYD SV+A  G+ L+G+  DTML+SYV+NSV  +HDMD LAL++L H  I+FE
Sbjct: 408 KKVGQNLKYDISVLANAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFE 467

Query: 480 QVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLV 539
            +AGKG  QLTFNQI+LE AA YAAEDAD+TLRLHQ + P +E++A+L  V+ +IE+PL+
Sbjct: 468 DIAGKGAKQLTFNQISLETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPLI 527

Query: 540 PVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQM 599
            +LS IER GV ID MLL  QS+E+A ++D+LE  AY++AG+ FNLSSPKQLQ + FE++
Sbjct: 528 HILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKL 587

Query: 600 KLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGR 659
             PV++KTP G PST EEVL ELALD+PLPKV++E+R L KLKSTYTDKLP M+N  TGR
Sbjct: 588 GYPVIKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGR 647

Query: 660 VHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIM 719
           VHTSYHQA  ATGRLSS++PNLQNIP+R  EGRRIRQAF+AP G KI+A DYSQIELRIM
Sbjct: 648 VHTSYHQANAATGRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIM 707

Query: 720 AHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLA 779
           AHLS D  LL+AF +GKDIH ATAAE+ G   D V+SEQRRRAKAVNFGLIYGMSAFGLA
Sbjct: 708 AHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLA 767

Query: 780 KQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAM 839
           +QL IPR EAQ Y+D YF RYPGV++YME+TR+ AA LGYV T+FGRRL+LPEI  RNAM
Sbjct: 768 RQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAM 827

Query: 840 RRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSL 899
           RR+AAERAAINAPMQGTAADIIKKAM+ + +WI+ +  G + ++MQVHDELVFEV     
Sbjct: 828 RRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKA 887

Query: 900 SEIESKVQQLMESAAELAVPLVAEAGHGDNWEQAH 934
             ++ KV +LM  AA L V L+AEAG GDNW++AH
Sbjct: 888 ETLKQKVCELMAKAANLDVELLAEAGIGDNWDEAH 922