Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 1015 a.a., DNA polymerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  320 bits (821), Expect = 2e-91
 Identities = 170/414 (41%), Positives = 261/414 (63%), Gaps = 6/414 (1%)

Query: 525  AKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFN 584
            A L+ + R +E+PLVPVL+ +E  G+ +D    +A   E+   LD++ Q  Y+ AG  FN
Sbjct: 604  ASLDTLMRTLELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQFN 663

Query: 585  LSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKST 644
            + S +QL  +LF  + LP + KT  G  +T+++ L++L+  +P+  +++++R L KL+ST
Sbjct: 664  IRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALEKLSGRHPVVDLILDFRKLEKLRST 723

Query: 645  YTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGW 704
            Y + LPK+++ + GR+H++++Q  TATGRLSS++PNLQNIP R + GRR+R  F A  G 
Sbjct: 724  YLEPLPKLVD-AAGRIHSTFNQLATATGRLSSSNPNLQNIPARGDLGRRMRSCFTAAEGN 782

Query: 705  KIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKA 764
             +++ DYSQIELR++AH+S D  LL AFR+G DIH  TA  +     + V+ +QRR AK 
Sbjct: 783  LLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKT 842

Query: 765  VNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIF 824
            +NFGLIYGM    L ++L I   EA++++++YF R   +  + ++  + A + G+V T+ 
Sbjct: 843  INFGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTLA 902

Query: 825  GRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLM 884
            GRR  LPE+ S N   R  A R AIN  +QG+AADIIK AML   +     G  + +L++
Sbjct: 903  GRRRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLAAHDDPVLHG-LKARLIL 961

Query: 885  QVHDELVFEVKESSLSEIESKVQQLME----SAAELAVPLVAEAGHGDNWEQAH 934
            QVHDEL+ EV E++      ++  LM         L VPL+ + G G +W  AH
Sbjct: 962  QVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDWGAGKDWGSAH 1015



 Score =  142 bits (358), Expect = 1e-37
 Identities = 95/325 (29%), Positives = 158/325 (48%), Gaps = 18/325 (5%)

Query: 8   PLILIDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGK 67
           PL L+DGS++++R F+A+     +   PTNA++ V  ++  ++R+      A + D KG 
Sbjct: 13  PLWLMDGSAFIFRGFYAFQNMQRSDGFPTNALFIVTRILLRLLREEKPRHFAFVLDGKGP 72

Query: 68  TFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQ 127
           TFR +++  YKA R   P+ L  Q+EP+ +++ A+GLPL   +G EADD I +LA +   
Sbjct: 73  TFRHDLFPLYKAQRAATPEPLVQQLEPIRRMVTALGLPLEVSDGCEADDCIASLAARYRD 132

Query: 128 AGMPVLISTGDKDMAQLVDDNITLIN--TMTNVVLDREGVIEKFGIPPELIIDYLALMGD 185
              PV+I   DKD+ Q +  N+ L +       +        + G+ P    D  A++GD
Sbjct: 133 E-RPVVIIGADKDLKQCLHPNVVLWDPGAKEEKLTTLASFTAETGLTPAQWPDVQAVIGD 191

Query: 186 KVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKL 245
             DNIPG+PGVG KTA+ +      LE +    D++          + +K E++     L
Sbjct: 192 TSDNIPGIPGVGPKTASKIFADFPTLEDIRDGFDRL-------PPNLQKKFEQHLDAMFL 244

Query: 246 SYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELL----DGGTGIVTA 301
             QL T+  D   + +P+ L  Q  D     +   +   ++   EL     +G   +   
Sbjct: 245 YRQLTTLAIDRCADLTPERLSVQPLDARTASTFLQEFELRALSRELAGMVRNGHVQVALP 304

Query: 302 DEQTKTSSVTVSTAATHAAAIPESP 326
            +    +S  + T A  A A P +P
Sbjct: 305 GD----ASAPMDTGAMAAPAAPSTP 325