Pairwise Alignments

Query, 934 a.a., DNA polymerase I from Vibrio cholerae E7946 ATCC 55056

Subject, 932 a.a., DNA polymerase I (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  736 bits (1900), Expect = 0.0
 Identities = 417/954 (43%), Positives = 603/954 (63%), Gaps = 42/954 (4%)

Query: 1   MAHIPDNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMMRQFASD--- 56
           MA    + L LIDGS++++RA+HA P  T  +  +P  A+ G  NM++  +   A     
Sbjct: 1   MAFGKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGDVT 60

Query: 57  RMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADD 116
            +AVIFD    TFR+++YDQYKA+R  MP++LR Q+        A  +    +EG EADD
Sbjct: 61  HVAVIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADD 120

Query: 117 VIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELI 176
           +I TLA QA +AG    I + DKD+ QLV   + +++ M N  +D +GV EKFG+ P+ +
Sbjct: 121 IIATLACQAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFEKFGVGPDRV 180

Query: 177 IDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKL 236
           +D  AL GD VDN+PG PG+G KTA  L+   G LE L     +I     R      Q L
Sbjct: 181 VDVQALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRR------QTL 234

Query: 237 EENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTELLDGGT 296
            E+R   +LS +L  + CD+EL+ + + L  + P+ + L+    ++ F++ LT+ + G  
Sbjct: 235 IEHRAQIELSKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRT-LTKRISGAL 293

Query: 297 GIVTADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQAEL 356
           G+       +  +V    A T +    E P   +  S++ TI + +  Q W++ +    +
Sbjct: 294 GV-------EAPAVPEPAATTASPEAEEHPP--LSASEHVTIRDAETLQSWIDAIHARGV 344

Query: 357 FAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAH------------DYLDAPQQLERD 404
            A DTET  L+ M A+LVG+S  V  G AAYLP+AH            +   A  QL+ +
Sbjct: 345 VAVDTETTGLNEMRADLVGVSLCVDPGRAAYLPLAHKDGGGADDLFGGEAKLAEGQLDFE 404

Query: 405 WVIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMD 464
             +  LKP+LED +  K+GQN+KYDA ++AR G+ +  I  DTML SY  ++    H MD
Sbjct: 405 TALGMLKPVLEDPAVLKIGQNMKYDAKILARNGITVAPI-DDTMLLSYALHAGLHGHGMD 463

Query: 465 SLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQD 524
           +L+ R+L H+ I  + + G GK+ +TF+ + +EEA +YAAEDA++TLRL QR+ P +   
Sbjct: 464 ALSERYLDHTPIPIKTLLGTGKSAITFDFVPIEEATKYAAEDAEITLRLWQRLKPRLHL- 522

Query: 525 AKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFN 584
           A++ +VY  +E P+VPVL+ +E  G+ +D   LS  S   A ++  LE   +ELAG+ FN
Sbjct: 523 AQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGESFN 582

Query: 585 LSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKST 644
           + SP QL  ILFE+M     +   SG  ST  +VL++LA ++ LP+ ++++R L+KLKST
Sbjct: 583 VGSPAQLGEILFEKMGFEGGKTGKSGKYSTPADVLEDLATEHDLPRRVLDWRQLSKLKST 642

Query: 645 YTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGW 704
           YTD L   INP TGRVHTSY  A   TGRL+STDPNLQNIPVR+EEGRRIR+AFVA  G 
Sbjct: 643 YTDALQDHINPETGRVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGH 702

Query: 705 KIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKA 764
            ++++DYSQIELRI+AH++G  AL  AFRDG DIHA TA+E+  VP+D+++ E RR+AKA
Sbjct: 703 VLVSLDYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKA 762

Query: 765 VNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIF 824
           +NFG+IYG+S FGLA+ L IPR EAQ ++D YFER+PG+  YM+DT + A +  YV+T+F
Sbjct: 763 INFGVIYGISGFGLARNLRIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLF 822

Query: 825 GRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLM 884
           GR++H PEI ++   +   A+RAAINAP+QGTAADII++AM+ +   I    D   ++L+
Sbjct: 823 GRKIHTPEIGAKGP-QAGFAKRAAINAPIQGTAADIIRRAMVRMPAAI---ADLPARMLL 878

Query: 885 QVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQAH 934
           QVHDEL+FEV+E ++  +   V+Q+ME AA     L VPL  +AG G +W +AH
Sbjct: 879 QVHDELIFEVEEDAVDRVIPAVRQVMEGAAAPVVHLDVPLTVDAGQGRSWAEAH 932