Pairwise Alignments

Query, 277 a.a., rhomboid family intramembrane serine protease GlpG from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., rhomboid family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.0 bits (149), Expect = 3e-14
 Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 34/223 (15%)

Query: 63  AEKYQAASWEVADQKRPQFHYASPNLLSLIKAKAG-VFTLFIMALCIIIFTLQTFGAGDE 121
           A K  AA    A+ K   + +     L+  K + G V T  ++   ++IF L        
Sbjct: 304 APKALAAKLTTAEPKAEFYAF-----LAEFKPRVGFVITPILLLSKVLIFMLM------- 351

Query: 122 VFNALHFPALAGQ---QW-----------QIWRWVSHALLHFSVMHIAFNLLWWWQFGGD 167
           VF + HF  L       W           Q+WR +S+  LH  +MH+ FNL   +  G  
Sbjct: 352 VFASHHFITLPNSVLLDWGANLRQLVLDQQVWRLISNVFLHGGLMHLIFNLYGLFFAGIF 411

Query: 168 LEQRLGSVRLIKLFVVSAIISG-AGQYWVEGANFGGLSGVVYALAGYL--WI-LGQRAPQ 223
           LE  LG  RL+ ++++S + +  A   W E     G SG +  L G L  WI +G     
Sbjct: 412 LEPLLGKWRLLGVYLMSGLAASIASISWYEATISIGASGAIMGLFGVLIMWIWMGSLPLA 471

Query: 224 LGLSIPRSLMGFMLIWLVLGYVQPFMAIANTAHLAGLISGVVL 266
             + +   L  F+   LV+G +     + N AHL GL SG++L
Sbjct: 472 THMLLALHLTLFVSASLVMGLLG---GVDNAAHLGGLGSGLLL 511