Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., chemoreceptor McpA from Phaeobacter inhibens DSM 17395

 Score =  373 bits (958), Expect = e-108
 Identities = 194/410 (47%), Positives = 279/410 (68%)

Query: 188 MNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQSQEYQHFW 247
           M+ ++ TQA+I+F  DGTIL AN NFL  VGYQL+EIQG+HHSMFVD  Y +S  Y+ FW
Sbjct: 21  MDMIDRTQAMIQFEPDGTILEANANFLGAVGYQLEEIQGKHHSMFVDPDYARSDAYKSFW 80

Query: 248 QRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRKMVVNEVK 307
             L +G+FF D+Y R  K G+ IWIQA+Y P++DSEGK  +V+K AT++T R+  V ++ 
Sbjct: 81  ADLAAGKFFTDQYPRVSKAGETIWIQATYAPVLDSEGKTVRVIKLATDITARQNSVEDIS 140

Query: 308 RVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLAATEISN 367
           + + ALS GDLS ++      +   L E  +    TL   +  + +VA  +   A+EIS 
Sbjct: 141 KGLEALSEGDLSYRVQPSDLPDMRVLCEAFNNAQDTLNGAVETVKAVADAVGSTASEISQ 200

Query: 368 GNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASGGELIEQ 427
            +++LS RTE QA+ LE+TA+++EEL STVR  +D A +   +   A   A   GE++  
Sbjct: 201 SSSELSHRTETQAATLEETAAAIEELTSTVRSAADGAREVEDIVSNARATAEESGEVVSN 260

Query: 428 VVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSL 487
            V  M+ I ES+ KI+ II VID IAFQTN+LALNA VEAARAGE GRGF+VVASEVR+L
Sbjct: 261 AVTAMSQIEESSGKISQIISVIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRAL 320

Query: 488 AQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQ 547
           AQRS++AA +IK LI++S   + NG +LV R+G  ++ I+ S+  +   ++ IA+ +AEQ
Sbjct: 321 AQRSSDAAGEIKQLINESSQYVGNGVKLVSRAGEELQKIIGSVSTISGHVSQIATGAAEQ 380

Query: 548 ATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAMFR 597
           +  + E+N  V+Q+D++TQ NAA+VEEA AAS++L   A +L   +++F+
Sbjct: 381 SVTLVEINTGVSQLDQVTQHNAAMVEEATAASQTLSNDANELTRQISIFK 430



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 85/478 (17%), Positives = 176/478 (36%), Gaps = 70/478 (14%)

Query: 64  VNQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGADFANLWRTH--QQPS 121
           + ++ + +I    A+++ EP+GTI  A+  F        E + G   +        +  +
Sbjct: 16  MERSIMDMIDRTQAMIQFEPDGTILEANANFLGAVGYQLEEIQGKHHSMFVDPDYARSDA 75

Query: 122 VQRLLQDAKKGHPVSAEL-QLSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDITAAKLE 180
            +    D   G   + +  ++S++ E IWI+A   P+    G+   V+ L  DITA +  
Sbjct: 76  YKSFWADLAAGKFFTDQYPRVSKAGETIWIQATYAPVLDSEGKTVRVIKLATDITARQNS 135

Query: 181 KIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQS 240
             D S  + A  L++  + + +  + L   +   +      D + G        E  K  
Sbjct: 136 VEDISKGLEA--LSEGDLSYRVQPSDLPDMRVLCEAFNNAQDTLNG------AVETVKAV 187

Query: 241 QEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRK 300
            +                     G    EI           S    ++    A  + +  
Sbjct: 188 AD-------------------AVGSTASEI--------SQSSSELSHRTETQAATLEETA 220

Query: 301 MVVNEVKRVMTALSSGDLSAQ-LTHPFEGEFAELGEVISQFIVTLRQI------ITDINS 353
             + E+   + + + G    + +         E GEV+S  +  + QI      I+ I S
Sbjct: 221 AAIEELTSTVRSAADGAREVEDIVSNARATAEESGEVVSNAVTAMSQIEESSGKISQIIS 280

Query: 354 VAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGK 413
           V   I      ++      ++R  +        AS   E+ +  +++SD A +   L  +
Sbjct: 281 VIDDIAFQTNLLALNAGVEAARAGEAGRGFAVVAS---EVRALAQRSSDAAGEIKQLINE 337

Query: 414 ATEIAASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQ 473
           +++   +G +L          ++ + +++  IIG +  I+   + +A  AA ++    E 
Sbjct: 338 SSQYVGNGVKL----------VSRAGEELQKIIGSVSTISGHVSQIATGAAEQSVTLVEI 387

Query: 474 GRGFS----------VVASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGS 521
             G S           +  E  + +Q  +N A ++   I  S+ K  +G + +   GS
Sbjct: 388 NTGVSQLDQVTQHNAAMVEEATAASQTLSNDANELTRQI--SIFKTGSGTQNIVSFGS 443