Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., methyl-accepting chemotaxis protein from Herbaspirillum seropedicae SmR1

 Score =  320 bits (821), Expect = 8e-92
 Identities = 177/306 (57%), Positives = 230/306 (75%), Gaps = 3/306 (0%)

Query: 293 ATNVTQRKMVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDIN 352
           ATNV++    + E  ++   ++ GDL+ ++      E   L E +     +LR I++++ 
Sbjct: 212 ATNVSRP---LKEAVQIAQRVARGDLTLRIRPAGRDETGALMEALRAMNESLRDIVSEVR 268

Query: 353 SVAATIKLAATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAG 412
               TI  A+ EI+ GN DLS+RTEQQA +LE+TAS+MEEL STV QN+DNA QAN LA 
Sbjct: 269 QGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEELTSTVTQNADNARQANQLAA 328

Query: 413 KATEIAASGGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGE 472
            A++IA+ GGE++ QVV TM  I ES+++IADII VIDGIAFQTNILALNAAVEAARAGE
Sbjct: 329 TASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIAFQTNILALNAAVEAARAGE 388

Query: 473 QGRGFSVVASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKR 532
           QGRGF+VVASEVRSLAQRSA AAK+IK LI DSV K+S G+ LV+R+GSTM ++V S++R
Sbjct: 389 QGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSALVERAGSTMTEVVASVRR 448

Query: 533 VHDLMADIASASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDH 592
           V D++A+I++A+ EQ+ GINEVN A+ QMDE TQQNAALVE+AAAA++SL  QA  L   
Sbjct: 449 VTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQAAAAADSLKGQASNLAAV 508

Query: 593 VAMFRL 598
           V  F+L
Sbjct: 509 VGKFKL 514