Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 567 a.a., methyl-accepting chemotaxis protein from Herbaspirillum seropedicae SmR1

 Score =  329 bits (843), Expect = 2e-94
 Identities = 185/349 (53%), Positives = 253/349 (72%), Gaps = 13/349 (3%)

Query: 313 LSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLAATEISNGNTDL 372
           +++GDL+A +T   + E  +L   ++    +LR+I++ + S    I  A+ +IS+GN DL
Sbjct: 230 IAAGDLTADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDL 289

Query: 373 SSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASGGELIEQVVVTM 432
           SSRTE+QAS+LE+TAS+MEEL STVRQN++NA QAN LA  A+ IA  GG+++ QV+ TM
Sbjct: 290 SSRTEEQASSLEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETM 349

Query: 433 ASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVASEVRSLAQRSA 492
            SI+ S++KI DII VID IAFQTNILALNAAVEAARAGEQGRGF+VVA+EVRSLAQRSA
Sbjct: 350 GSIDASSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA 409

Query: 493 NAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIASASAEQATGIN 552
            AAK+IK LI +SV ++  G+ LV ++G T+ ++V S++RV D+M++I++AS EQ  GI 
Sbjct: 410 TAAKEIKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIE 469

Query: 553 EVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAMFRLPDQDTSAPSLLKAV 612
           +VNQA+ QMDE+TQQNAALVEEAA+AS+SL  QA++L + V +FRLP           A 
Sbjct: 470 QVNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRLPG---------AAR 520

Query: 613 NKRPQSAPVTRHPASHIAKTPAKITAKASSRAQPVMQVAH--DEEWESF 659
            + P+ A V     ++  + PA   A A+S A P + VA   DE+WE+F
Sbjct: 521 QQVPEVAVVATAAPAYTPRRPA--VAGATSTATPALAVAQGPDEQWETF 567