Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps from Pseudomonas fluorescens FW300-N2E2

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 13/328 (3%)

Query: 20  VLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGFLRMSTT 79
           +LA+ALP++++ +    +G VDA + G +     L  VALG+++    F L+    ++TT
Sbjct: 1   LLALALPIMVAQLATTAMGFVDAVMAGRVGPR-DLAAVALGNSIWVPVFLLMTGTLLATT 59

Query: 80  GLTAQAHGAQNSQQLARVLLQGSVIAL--GLAALFLLFHRPVAELIFHFSDASSEVKTYA 137
              AQ  GA    ++  ++ Q   +AL  GL A   LF    AE I H  +   E+    
Sbjct: 60  PKVAQRFGAGTFAEIGPLVRQALWLALVVGLIASLALFS---AEPILHIMNVDPELIGPC 116

Query: 138 EAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLG-LGLKV 196
             Y        PA  L  VL  +  G    R  M + +     NI L+ + + G LG+  
Sbjct: 117 MEYLRGIGTGLPAVALYHVLRCFSDGLGRTRPAMVLGLCGLALNIPLNYIFIYGHLGVPA 176

Query: 197 EGAA---IASVIADYAGLLFGLLCVGRYWRQHQLPAPFS-FIPSLTKELSRLVALNRDIF 252
            G      A+ I  +  +  G+    R+   +Q    FS F       + RL+ +   I 
Sbjct: 177 MGGVGCGWATAIVMWV-MALGMAGWARWAPAYQSSRLFSRFDWPQWAVIKRLLGIGLPIG 235

Query: 253 LRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVGKAIGAK 312
           +      ++F+ +     +LG  +VA + + ++F  ++         A+   VG+A+G  
Sbjct: 236 IAVFAESSIFAVIALLIGSLGATVVAGHQIALNFSSLVFMIPYSLGMAVTVRVGQALGRA 295

Query: 313 DDRQLR-TAMISSTFWATMICLLLSLIF 339
             R+ R  A +         CL  SL+F
Sbjct: 296 QPREARFAAGVGMGTALAYACLSASLMF 323