Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., MATE efflux family protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 85.1 bits (209), Expect = 4e-21
 Identities = 93/443 (20%), Positives = 199/443 (44%), Gaps = 37/443 (8%)

Query: 18  RQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGFLRMS 77
           ++++ +ALP++++ +T  ++G +D  + G +  A  +  VA+G+++       +  L M+
Sbjct: 9   KKLIQLALPVLIAQVTQTMMGFIDTLMAGRVS-AVDMAAVAVGTSLWLPALLFVQGLLMA 67

Query: 78  TTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEVKTYA 137
            T + +Q HGA +   +  +  Q + IA+  A   +LF    +E++    D  ++++  +
Sbjct: 68  FTPVFSQLHGADDEASIRPLAYQAAYIAIIGAFAVMLFLGLSSEILTRM-DLETDLRQLS 126

Query: 138 EAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLG-LGLKV 196
           E Y +   W  PA ++  VL G   G       M +  +    NI  + + + G  G+  
Sbjct: 127 EGYLFGFLWGVPAFVMYQVLRGMSEGISYTLPTMVIGFVGLAVNIPANYIFIYGHFGMPA 186

Query: 197 EGAA---IASVIADYAGLLFGLLCVGRYWRQHQLPAPF-SFIPSLTKELSRLVALNRDIF 252
            G A   +A+ +  +A +L  +L    + ++  L +PF +F       + R+  L   I 
Sbjct: 187 MGGAGCGVATALVFWA-MLIAMLIYMAFHKKFALVSPFKAFEQPKISTMWRMTKLGFPIA 245

Query: 253 LRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVGKAIG-A 311
           +      ++F+ +    A LG ++VA + + ++F  ++         A+   +G  +G  
Sbjct: 246 MALFFEVSLFAIIALLLAPLGANVVAGHQIALNFSSIVFMLPLSIGLAVSIRIGYYLGRE 305

Query: 312 KDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMP 371
           K D     A +     A  +  + ++I + F  ++ ++    P+V A A        ++ 
Sbjct: 306 KADVAALVAKVGLGL-ALFLASITAVITVVFRVEIARLYNTDPNVVALAS-------SLM 357

Query: 372 LIAVWCFLLDGVFI---GATKG-KEMRNSMAVSAVAFFAI---YGFMTHY--------GN 416
           L+A    L D V +   GA +G K+ R++  ++ ++++AI    G+   Y        G 
Sbjct: 358 LMAALYQLSDSVQVVAAGALRGYKDTRSAFYITLISYWAIGMTLGYTLAYTDWLVPAMGA 417

Query: 417 HALWLAMLSFMALRGFTLGATFY 439
           H  W  +++     G T  A  +
Sbjct: 418 HGFWTGLIA-----GLTTAAALF 435