Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score = 68.6 bits (166), Expect = 4e-16
 Identities = 75/335 (22%), Positives = 152/335 (45%), Gaps = 18/335 (5%)

Query: 13  QPNVHRQVLAIALPMVLSNITVPLLGLVDA---AVIGHLEHA---WYLGGVALGSTMISV 66
           Q ++ R +L ++    +    + ++ L+D    +++G  E A    Y G ++  +T I +
Sbjct: 8   QGSIMRHILVMSSTAAIGISALFVVDLIDIFFLSLLGEQELAAAVGYAGTISFFTTSIGI 67

Query: 67  TFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHF 126
                  L ++   L ++A GA+  +   R+LL  +V+ + +A++  +        +   
Sbjct: 68  G------LSIALGALVSRAVGAKEFELAKRLLLNSAVVTVLVASVVAIIVTCFIPELLTL 121

Query: 127 SDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDL 186
             A+      A  Y YI   S P   L   L   L    +A+  M   +     N+V D 
Sbjct: 122 VGATGRTGELAAGYLYILVPSMPIICLAMALGAALRAVGDAKLSMVSTLTGGGVNLVFDP 181

Query: 187 LLVLGLGLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSLTKELSRLVA 246
           + +  L + +EGAA+ASV+A  A LL     V     +H+L   F  + +  +++  + A
Sbjct: 182 IFIFLLAMGIEGAALASVLARLAVLLVAARGV---VVKHKLFGRFD-LTAFKEDIKPIFA 237

Query: 247 LNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGM-DGFAYAMEAMV 305
           +     + ++      + +T   A  GD  VAA AVL   L  +++GM    + A+  +V
Sbjct: 238 IAGPAMMTNIATPIGNAVVTRAIAEFGDSYVAAWAVL-GRLTPVAFGMIFALSGAIGPIV 296

Query: 306 GKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFL 340
           G+  GA++  ++R ++  +  +  +  + +SL+ +
Sbjct: 297 GQNFGAREFARVRQSLTKALQFCALYVVTVSLLLM 331



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 296 GFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPS 355
           G + A+ A+V +A+GAK+    +  +++S     ++  ++++I   F  +L+ ++     
Sbjct: 68  GLSIALGALVSRAVGAKEFELAKRLLLNSAVVTVLVASVVAIIVTCFIPELLTLVGATGR 127

Query: 356 VQATAEHYLPWLV-AMPLIAV 375
               A  YL  LV +MP+I +
Sbjct: 128 TGELAAGYLYILVPSMPIICL 148