Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  410 bits (1054), Expect = e-119
 Identities = 217/436 (49%), Positives = 290/436 (66%), Gaps = 8/436 (1%)

Query: 8   LQTLKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVT 67
           L  L     + Q+ A+A+PM+LSNITVPLLGLVD AV+GHL +A+YLGGVA+GST+I++ 
Sbjct: 4   LNLLLNKQKNSQLFALAVPMILSNITVPLLGLVDTAVVGHLSNAYYLGGVAVGSTVITLI 63

Query: 68  FWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFS 127
            W+LGFLRMSTTGL AQA GA+      R+L+Q + +AL L+ L LL  +P+       S
Sbjct: 64  LWILGFLRMSTTGLVAQAFGAKELHTQYRLLMQSASLALLLSLLVLLLQQPIITAAMALS 123

Query: 128 DASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLL 187
           DAS +V+ Y++AYF IR WS P AL+N  LLGWLLG Q  +A MW +I  NLTNI+LDLL
Sbjct: 124 DASEQVQYYSQAYFNIRIWSTPFALVNLALLGWLLGRQQPKAAMWQLIAANLTNILLDLL 183

Query: 188 LVLGLGLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSL----TKELSR 243
            V+GLG  VEGAA+ASV+AD  G       V R  ++      F F+P L         R
Sbjct: 184 FVIGLGWGVEGAALASVLADMTGFAVAASMVVRTIKRE---GGFEFLPLLRSLSLNSYQR 240

Query: 244 LVALNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEA 303
           LV LN DIF+RSLCLQ  F+FMTFQGA LGD+ VAANAVL++ L++ISY +DG AY  EA
Sbjct: 241 LVRLNLDIFIRSLCLQLAFAFMTFQGANLGDNTVAANAVLLNLLLLISYALDGIAYYGEA 300

Query: 304 MVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHY 363
            VG+A+G K  +++  ++  +  W+ +  LL +L F  +G  +I+++TNI  V+  A  Y
Sbjct: 301 EVGRAVGEKSHQRMTQSVTLAGLWSAIFALLFTLFFALWGEQIIKLLTNISEVRQEALAY 360

Query: 364 LPWLVAMPLIAVWCFLLDGVFIGATKGKEMRNSMAVSAV-AFFAIYGFMTHYGNHALWLA 422
           L W+VA+PL+A   +L DGV+IGA +GK MRN+M ++    FF  +  +  YGNHALW A
Sbjct: 361 LGWVVALPLLAFGSYLFDGVYIGAAQGKAMRNTMILATFGVFFPTWLLLQDYGNHALWAA 420

Query: 423 MLSFMALRGFTLGATF 438
           M  FM  R  +L   +
Sbjct: 421 MSLFMVTRSLSLALDY 436