Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., DNA-damage-inducible protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  400 bits (1028), Expect = e-116
 Identities = 221/444 (49%), Positives = 293/444 (65%), Gaps = 13/444 (2%)

Query: 5   SLILQTLKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMI 64
           S  L  L     +RQ+ A+ALPM+LSNITVPLLGLVD AVIGHL  A+YLGGVALGST+I
Sbjct: 6   STALALLFNGTKNRQLFALALPMILSNITVPLLGLVDTAVIGHLSDAYYLGGVALGSTII 65

Query: 65  SVTFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIF 124
           ++  WLLGFLRM+TTGL AQA+GA +     ++L+QG+++A GL    +L   P+  L  
Sbjct: 66  TLIIWLLGFLRMATTGLVAQAYGANDINAQLKLLVQGAMLATGLGIAMILLQVPLLSLAL 125

Query: 125 HFSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVL 184
            FS+AS EV+ Y   YF IR WS P ALLN V+LGWLLG Q  +A MW +I  N+ NI+L
Sbjct: 126 SFSEASVEVERYCREYFQIRIWSTPFALLNLVMLGWLLGRQQPKAAMWQLIFANVANIIL 185

Query: 185 DLLLVLGLGLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQL--PAPFSFIPSLTK--E 240
           D+L VLG G  V+GAA+ASV AD       L  V    +Q +L    PF+ I +  +   
Sbjct: 186 DVLFVLGFGWGVKGAALASVFADITAFSVALYMV---LQQVKLIPNYPFAEIRAHIRFTG 242

Query: 241 LSRLVALNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYA 300
             +L+ LN DIF+RSLCLQ  F+FMTF GA LGD+ VAANAVL++ L++ISY +DG AY 
Sbjct: 243 FGQLLRLNSDIFIRSLCLQTAFAFMTFHGAGLGDNTVAANAVLLNLLLLISYALDGIAYY 302

Query: 301 MEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATA 360
            EA VGKA G K  +QL  A++ +  W+ +  L  +LIF  +GS +I+++T+I  V+ TA
Sbjct: 303 AEAEVGKAYGQKRAQQLHEAVVLAWCWSAITALGFTLIFSLWGSHIIELLTSIDEVRTTA 362

Query: 361 EHYLPWLVAMPLIAVWCFLLDGVFIGATKGKEMRNSMAVSAV-AFFAIYGFM-----THY 414
           + YL WLV +PL +   +L DGV+IGA +GK MRNSM ++   AFF  +  +     +  
Sbjct: 363 QIYLIWLVLLPLWSFSSYLFDGVYIGAAQGKVMRNSMIIATFGAFFPTWYLLQSLLPSEQ 422

Query: 415 GNHALWLAMLSFMALRGFTLGATF 438
            NHALW AM +FM +R  TL A +
Sbjct: 423 ANHALWAAMTAFMLMRSLTLAAHY 446