Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.9 bits (180), Expect = 1e-17
 Identities = 83/363 (22%), Positives = 157/363 (43%), Gaps = 17/363 (4%)

Query: 34  VPLLGLVDAAVIGHLEHA---WYLGGVALGSTMISVTFWLLGFLRMSTTGLTAQAHGAQN 90
           V LL +   +++G  E A    Y G ++  +T+I +       L ++   L +++ GA++
Sbjct: 32  VDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIG------LSIALGALVSRSIGAKD 85

Query: 91  SQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEVKTYAEAYFYIRAWSAPA 150
            +   R+LL  +V+   ++    +        +     AS      AE+Y YI   S P 
Sbjct: 86  VELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAELAESYLYILVPSLPF 145

Query: 151 ALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLGLGLKVEGAAIASVIADYAG 210
             L   L G L    +A+  M   +     N VLD + +    + +EGAA+ASV+A    
Sbjct: 146 ICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFAMGIEGAALASVLA---- 201

Query: 211 LLFGLLCVGR-YWRQHQLPAPFSFIPSLTKELSRLVALNRDIFLRSLCLQAVFSFMTFQG 269
            +   +  GR    +HQL   F+       +L  + A+     L ++      +F+T   
Sbjct: 202 RITVFVIAGRGVMVKHQLLGKFN-RSDFKADLKPIFAIAGPAILTNIATPIGNAFVTRAI 260

Query: 270 AALGDDIVAANAVLMSFLMMISYGM-DGFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWA 328
           A  GD  VA  AVL   L+ +++GM    + A+  +VG+  GA    ++R ++  +  + 
Sbjct: 261 ADFGDAYVAGWAVL-GRLVPVTFGMIFALSGAIGPIVGQNFGAGRFDRVRESLTKAIQFC 319

Query: 329 TMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMPLIAVWCFLLDGVFIGAT 388
           T+  +++SL+     S ++ +        A  E +  ++    + +   F+ +  F    
Sbjct: 320 TLYVVVMSLLLFLLKSQIVSLFDMKGDSAALIEFFCSYIAVFFIFSGILFVANASFNNLG 379

Query: 389 KGK 391
           K K
Sbjct: 380 KAK 382



 Score = 31.2 bits (69), Expect = 8e-05
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 18  RQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGFLRMS 77
           + + AIA P +L+NI  P+        I     A+  G   LG  ++ VTF ++  L  +
Sbjct: 233 KPIFAIAGPAILTNIATPIGNAFVTRAIADFGDAYVAGWAVLG-RLVPVTFGMIFALSGA 291

Query: 78  TTGLTAQAHGA----QNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEV 133
              +  Q  GA    +  + L + +   ++  + ++ L  L    +  L     D+++ +
Sbjct: 292 IGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSAALI 351

Query: 134 KTYAE--AYFYI 143
           + +    A F+I
Sbjct: 352 EFFCSYIAVFFI 363