Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Na+ driven multidrug efflux pump from Caulobacter crescentus NA1000

 Score = 78.2 bits (191), Expect = 5e-19
 Identities = 120/444 (27%), Positives = 179/444 (40%), Gaps = 28/444 (6%)

Query: 19  QVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGFLRMST 78
           ++L +A P+VLS + + ++GL DA V+GH   A  LG  A+     SV       L +  
Sbjct: 31  ELLRLAGPVVLSRLGIMVMGLTDAIVVGHFS-AQQLGYHAMAWAPSSVFVTATVGLLVGV 89

Query: 79  TGLTAQAHGAQNSQQLARVLLQGSVIA--LGLAALFLL-FHRPVAELIFHFSDASSEVKT 135
             +TA+A GA N  +   VL +G V A  LG  ++ LL    P+        D  +E  T
Sbjct: 90  QVMTARAMGAGNPHETGAVLRRGLVYAGWLGFGSMALLALFGPMFLQAMGLKDGLAEGAT 149

Query: 136 YAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLGL--- 192
                F +   S P   ++ VL  WL G         M+ + N+ N+  +LLLV G+   
Sbjct: 150 LPLIVFSL---SLPVYAISVVLTFWLEGLSRPGPGAAMMWLANVVNLGANLLLVPGVLGP 206

Query: 193 -GLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQL---PAPFSFIPSLTKELSRLVALN 248
             L   G A A+ IA  A  L   + V R     +L     P    P+  ++        
Sbjct: 207 PALGAVGGAWATFIARTALALALAIFVIRMKEARELGVFDKPARDRPAEIEQRRIGYGAG 266

Query: 249 RDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVGKA 308
              F       + F+ M      +    VAA  V+++   +I     G A A   MVG+A
Sbjct: 267 ASNFFE----VSAFAGMNLICGWISAVAVAAYTVVLNVSAIIFMVPLGVASATAVMVGRA 322

Query: 309 IGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLV 368
            GA+D   +  A   +     +I +L  L+       +    T  P+  A     LP LV
Sbjct: 323 YGARDPAGMTRAGWIAFAVIGVIGVLFGLLLYPTKHWVALAYTTDPAALAL---ILPALV 379

Query: 369 AMPLIAVWCFLLDGVFIGATKGKEMRNSMAVSAVAFFAIYGFMTHYGNHALWLAMLSFMA 428
               +A   F  D V + A +    R  + V  +     Y  +   G  A WLA+   M 
Sbjct: 380 ----LACLFFAPDAVQVVAAQALRARGEVWVPTITHLISYALV--MGPLAWWLAIPKGMG 433

Query: 429 LRGFTLGATFYTQWRAGTFLPARF 452
           L G  L +   T + A  FL  RF
Sbjct: 434 LNG-VLVSIIVTSFLAAGFLLMRF 456