Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., conserved hypothetical protein, putative membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 74.3 bits (181), Expect = 7e-18
 Identities = 99/431 (22%), Positives = 173/431 (40%), Gaps = 38/431 (8%)

Query: 20  VLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGS--TMISVTFWLLGFLRMS 77
           +    LP++  N+      LVDAA++G      +LG  AL S     SV F +LGF    
Sbjct: 16  IFNFTLPLLFGNLLQQTYSLVDAAIVGK-----FLGINALASVGASTSVVFLILGFCNGC 70

Query: 78  TTGL---TAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEVK 134
             G     AQ  GA++   +   +     +A+ ++ +  +F       I         + 
Sbjct: 71  CGGFGIPVAQKFGARDYSTMRSYVSVSLQLAVVMSVVIAIFTSIYCADILKMMRTPENIF 130

Query: 135 TYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLGLGL 194
             A AY  +     P      +L   +    +++ P + +++  + NI+LDL  +L LG 
Sbjct: 131 EGAYAYLLVTFIGIPCTFFYNLLSSIIRALGDSKTPFYFLVLATVLNIILDLFCILVLGW 190

Query: 195 KVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSLTKELSRLVALNRDIFLR 254
            V GAAIA+V +         LC    +R+      F  +    KE      L + +   
Sbjct: 191 GVMGAAIATVFSQGVS---AFLCYVYMYRK------FDILRGTPKERKYQSKLAKTLLSI 241

Query: 255 SLCLQAVFSF-----MTFQGA--ALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVGK 307
            + +   FS      +  Q A  ALG   VAA    M   M     ++    AM    G+
Sbjct: 242 GVPMGLQFSITAIGSIMLQSANNALGTACVAAFTSAMRIKMFFLCPLESLGMAMATFSGQ 301

Query: 308 AIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPS---VQATAEHYL 364
             GA    ++ + + +ST    +I   ++ + L  G+    +I   PS   +    E +L
Sbjct: 302 NYGAGKPERIWSGIKASTL-MMVIYTAVTFLILMLGAKSFALIFVDPSEIEILEKTELFL 360

Query: 365 PWLVA-MPLIAVWCFL---LDGV-FIGATKGKEMRNSMAVSAVAFFAI--YGFM-THYGN 416
              V+  P++ + C L   + GV +        +   +A   V+ +A+  +GF+   YG+
Sbjct: 361 HISVSFFPMLGLLCILRYTIQGVGYTNLAMFSGVSEMIARILVSIYAVPAFGFIAVCYGD 420

Query: 417 HALWLAMLSFM 427
              W+A   F+
Sbjct: 421 PMAWIAADLFL 431