Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., cation efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 66.6 bits (161), Expect = 2e-15
 Identities = 70/325 (21%), Positives = 135/325 (41%), Gaps = 7/325 (2%)

Query: 20  VLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWY--LGGVALGSTMISVTFWLLGFLRMS 77
           V  +ALP V +     L  +VD   IGH+       L GV + +++I +       +   
Sbjct: 18  VFKMALPAVAAQFVNLLYSIVDRIYIGHIPGIGTDALAGVGVTTSLIILISSFSAIVGGG 77

Query: 78  TTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEVKTYA 137
              L A A G  +  +  ++L  G V+ +    L  +      E I  F+ AS     YA
Sbjct: 78  GAPLAAIALGQGDRVRAGKILGNGFVLLILFTLLTSVIAYTFMEPILLFTGASENTLEYA 137

Query: 138 EAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLGLGLKVE 197
             Y  I         ++  L  ++         M+ V+I  L NI+LD + +    + V+
Sbjct: 138 VDYLSIYLLGTIFVEISTGLNSFINAQGRPAIAMFSVLIGALLNIILDPIFIFWFDMGVK 197

Query: 198 GAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSLTKELSRLVALNRDIFLRSLC 257
           GAA+A+V++     ++ +  +  + R+  LP    ++    K +  ++AL    F+ +  
Sbjct: 198 GAALATVLSQACSAVWVVSFL--FSRRASLPLEKRYMGLDRKIILSILALGVSPFIMAST 255

Query: 258 LQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVGKAIGAKDDRQL 317
              V   +       GD  ++A  +L S +   S  + GFA     ++    G  D +++
Sbjct: 256 ESLVGFVLNSSLKEFGDIYISALTILQSSMQFASVPLTGFAQGFVPIISYNFGHGDKQRV 315

Query: 318 RTA---MISSTFWATMICLLLSLIF 339
           +     ++ + F   +I +L  ++F
Sbjct: 316 KDCFRIVLVTMFSFNLILMLFMILF 340