Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., DNA-damage-inducible protein F (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  318 bits (815), Expect = 2e-91
 Identities = 165/421 (39%), Positives = 251/421 (59%), Gaps = 2/421 (0%)

Query: 12  KQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLL 71
           K  + +R++L IA+P ++SNITVPLLGL+D  ++GHL    Y+G +A+G  + ++ +W+ 
Sbjct: 5   KTTSENRRILQIAVPSIISNITVPLLGLIDVTIVGHLGSPAYIGAIAVGGMLFNIIYWIF 64

Query: 72  GFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASS 131
           GFLRM T+G+T+QA+G  +  ++ R+L++   + L +A   L+   P+    F     + 
Sbjct: 65  GFLRMGTSGMTSQAYGQHDLNEINRLLIRSVGVGLFIALCLLILQYPILNAAFTLIQTTE 124

Query: 132 EVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLG 191
           EVK  A  YFYI  W APA L  +   GW +G QN+R PM++ I  N+ NI+  L  V  
Sbjct: 125 EVKQLATTYFYICIWGAPAMLGLYGFAGWFIGMQNSRFPMYIAITQNIVNIIASLSFVYL 184

Query: 192 LGLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSLTKELSRLVALNRDI 251
           L +KV G A  ++IA YAG    +L   RY+   +    +  I    + + R   +NRDI
Sbjct: 185 LDMKVAGVAAGTLIAQYAGFFMAILLYMRYYSTLRKRIVWKDIIQ-KQAMYRFFRVNRDI 243

Query: 252 FLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVGKAIGA 311
           F R+LCL  V  F T  GAA G+ ++A N +LM    + SY MDGFAYA EA+ G+ IGA
Sbjct: 244 FFRTLCLVIVTMFFTSAGAAQGEVVLAVNTLLMQLFTLFSYIMDGFAYAGEALAGRYIGA 303

Query: 312 KDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMP 371
           ++   LR  +    +W   +    +L++   G + + ++TN  SV ++++ Y  W +A+P
Sbjct: 304 RNQTALRNTVNHLFYWGIGLSAAFTLLYAIGGKEFLGLLTNDVSVISSSDTYFYWALAIP 363

Query: 372 LIAVWCFLLDGVFIGATKGKEMRNSMAVSAVAFFAI-YGFMTHYGNHALWLAMLSFMALR 430
           L     FL DGVFIGAT  ++M  SM V++V+FF I Y F    GNHALWLA +++++LR
Sbjct: 364 LTGFSAFLWDGVFIGATATRQMLYSMLVASVSFFMIYYAFHNLLGNHALWLAFITYLSLR 423

Query: 431 G 431
           G
Sbjct: 424 G 424