Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., BexA, putative cation effux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 65.9 bits (159), Expect = 3e-15
 Identities = 88/388 (22%), Positives = 159/388 (40%), Gaps = 36/388 (9%)

Query: 17  HRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMIS----VTFWLLG 72
           ++Q+  I  P+++S +   L+ + DA  +GH      +G + LG++ ++    +  ++LG
Sbjct: 5   YKQIWLINFPVMMSILMEQLINITDAVFLGH------VGEIELGASALAGIYYLAIYMLG 58

Query: 73  F-LRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASS 131
           F   +    + A+ +G Q+ ++  R   QG    + +A +  L    V+  I      S 
Sbjct: 59  FGFSIGLQVMIARRNGEQHYKETGRTFFQGLYFLMVMAIMLCLLIHLVSPFILQQLITSD 118

Query: 132 EVKTYAEAYFYIRAWSAPAALLNFVLL---GWLLGTQNARAPMWMVIITNLTNIVLDLLL 188
           E+  Y     Y+  W +   L +F  L    +L+G  N +      +     NI  + LL
Sbjct: 119 EI--YQAVIRYLN-WRSFGLLFSFPFLAFRAFLVGVTNTKLLSGAALTAVCINIPFNYLL 175

Query: 189 VLGLGLKVEGAAIASVIADYAGLLFGLL--CVGRYWRQHQLPAPFSFIPSLTKELSRLVA 246
           +  L + + GAA+AS IA++   L  LL  C     +++ L A +       + L +L+ 
Sbjct: 176 IFKLDMGISGAAMASSIAEFGAFLILLLYMCKTVDKKKYGLSAVYD-----GRLLMKLLQ 230

Query: 247 LNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVG 306
           L+    L +    A +         LG   +A + +  S   +    ++ FA    ++V 
Sbjct: 231 LSVWSMLHAFISVAPWFLFFVAIEHLGKTELAISNITRSVSTLFFVIVNSFASTTGSLVS 290

Query: 307 KAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPW 366
             IG    ++L            ++ L L L  L     +I   TN          YL  
Sbjct: 291 NLIGGGQGKELFPVCRKVLRLGYVVGLPLILTALWGNQWIIGFYTN--------NDYLVK 342

Query: 367 LVAMPLIAV---WCFLLDG-VFIGATKG 390
           L   P I +   + F L G V+I A  G
Sbjct: 343 LAFWPFIVMLLNYVFALPGYVYINAVTG 370