Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., BexA: efflux pump for ciprofloxacin, lomefloxacin, and paraquat (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score = 67.8 bits (164), Expect = 7e-16
 Identities = 71/359 (19%), Positives = 160/359 (44%), Gaps = 22/359 (6%)

Query: 11  LKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWL 70
           +K    ++Q+  IA P+++S I   L+G+ D A +G       +G + LG++ I+  ++L
Sbjct: 1   MKTKYTYKQIWTIAYPILISLIMEQLIGMTDTAFLGR------VGEIELGASAIAGVYYL 54

Query: 71  LGFL-----RMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFH 125
             F+      +    L A+ +G  N +++  +  QG    + +AA+        +  I  
Sbjct: 55  AIFMMAFGFSVGAQILIARRNGEGNYKEIGPIFYQGIYFLVVVAAILFTLSIVFSPFILK 114

Query: 126 FSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLD 185
              +S  +   AE+Y + R +    + +  +   + +GT   +      I+  L+N+V +
Sbjct: 115 NIISSPHIYDAAESYIHWRVYGFFFSFVGVMFRAFFVGTTQTKTLTLNSIVMVLSNVVFN 174

Query: 186 LLLVLGL----GLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPA-PFSFIPSL-TK 239
            +L+ G      L + GAAI S +A+   ++F ++     W++        + +P   ++
Sbjct: 175 YILIFGKFGFPQLGIAGAAIGSSLAELVSVIFFIIYT---WKRIDCKKYALNILPKFQSR 231

Query: 240 ELSRLVALNRDIFLRS-LCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFA 298
            L R++ ++    +++ + L   F F  F    LG+  +A   ++ +   +       FA
Sbjct: 232 TLKRILNVSVWTMIQNFVSLSTWFMFFLFV-EHLGERSLAIANIIRNVSGIPFMIAMAFA 290

Query: 299 YAMEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQ 357
               ++V   IGA +   +R  +        +  L + + F  F   ++++ T++P ++
Sbjct: 291 ATCGSLVSNLIGAGEKDCVRGTINQHIRIGYVFVLPILIFFCLFPDLILRIYTDMPDLR 349



 Score = 37.0 bits (84), Expect = 1e-06
 Identities = 29/147 (19%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 272 LGDDIVAANAVLMSFLMMISYGMDGFAYAMEAMVGKAIGAKDDRQLRTAMISSTFWATMI 331
           +G+  + A+A+   + + I     GF+   + ++ +  G  + +++        ++  ++
Sbjct: 38  VGEIELGASAIAGVYYLAIFMMAFGFSVGAQILIARRNGEGNYKEIGPIFYQGIYFLVVV 97

Query: 332 CLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMPLIAVWCFLLDGVFIGATKGK 391
             +L  + + F   +++ I + P +   AE Y+ W V     +    +    F+G T+ K
Sbjct: 98  AAILFTLSIVFSPFILKNIISSPHIYDAAESYIHWRVYGFFFSFVGVMFRAFFVGTTQTK 157

Query: 392 EMR-NS--MAVSAVAF-----FAIYGF 410
            +  NS  M +S V F     F  +GF
Sbjct: 158 TLTLNSIVMVLSNVVFNYILIFGKFGF 184