Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., MATE efflux family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  407 bits (1046), Expect = e-118
 Identities = 224/445 (50%), Positives = 292/445 (65%), Gaps = 14/445 (3%)

Query: 5   SLILQTLKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMI 64
           S  L  L     +RQ+LA+ALPM+LSNITVPLLGLVD AVIGHL  A+YLGGVALGST+I
Sbjct: 6   STALALLLNGTKNRQLLALALPMILSNITVPLLGLVDTAVIGHLSDAYYLGGVALGSTII 65

Query: 65  SVTFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIF 124
           ++  WLLGFLRM+TTGL AQA+GA +     ++L+QG+++A GL    +L   P+  L  
Sbjct: 66  TLIIWLLGFLRMATTGLVAQAYGANDLNAQLKLLVQGAMLATGLGIAVILLQIPILNLSL 125

Query: 125 HFSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVL 184
             S+AS EV+ Y   YF +R WS P ALLN V+LGWLLG Q  +A MW +I  N+ NI+L
Sbjct: 126 SLSEASVEVERYCREYFQVRVWSTPFALLNLVMLGWLLGRQQPKAAMWQLIFANVANIIL 185

Query: 185 DLLLVLGLGLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSF----IPSLTKE 240
           D+L V+G G  V+GAA+ASV AD       L  V    +Q +L + F+F    I      
Sbjct: 186 DVLFVIGFGWDVKGAALASVCADITAFSVALYMV---LQQLKLSSQFTFGHLRIHLTFVG 242

Query: 241 LSRLVALNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYA 300
             +L+ LN DIF+RSLCLQA F+FMTF GA LGD+ VAANAVL++ L++I+Y +DG AY 
Sbjct: 243 YGQLLRLNTDIFIRSLCLQAAFAFMTFHGAGLGDNTVAANAVLLNLLLLIAYALDGIAYY 302

Query: 301 MEAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATA 360
            EA VGKA G K  + LR A++ +  W+ +  L  SLIF  FG  +I ++TNI  V+ TA
Sbjct: 303 AEAEVGKAYGQKRTQPLREAVLLAWCWSAISALGFSLIFYLFGDRIIGLLTNIDEVRTTA 362

Query: 361 EHYLPWLVAMPLIAVWCFLLDGVFIGATKGKEMRNSMAVSAV-AFFAIYGFM-----THY 414
           + YLPWL+ +PL +   +L DGV+IGA KGK MRNSM ++   AFF  +  +     +  
Sbjct: 363 QIYLPWLILLPLWSFSSYLFDGVYIGAAKGKVMRNSMIIATFGAFFPAWYLLQSLLPSEQ 422

Query: 415 GNHALWLAMLSFMALRGFTLGATFY 439
            NHALW AM +FM  R  TL AT Y
Sbjct: 423 ANHALWAAMTAFMLTRSLTL-ATHY 446