Pairwise Alignments

Query, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., MATE efflux family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 88/367 (23%), Positives = 161/367 (43%), Gaps = 25/367 (6%)

Query: 34  VPLLGLVDAAVIGHLEHA---WYLGGVALGSTMISVTFWLLGFLRMSTTGLTAQAHGAQN 90
           V LL +   +++G  E A    Y G ++  +T I +       L ++   L +++ GA++
Sbjct: 32  VDLLDIFFLSLLGEHELAAAVGYAGSISFFTTSIGIG------LSIALGALVSRSIGAKD 85

Query: 91  SQQLARVLLQGS----VIALGLAALFLLFHRPVAELIFHFSDASSEVKTYAEAYFYIRAW 146
            +   R+LL  +    +I+L ++ +   F   +  L+     AS      AE+Y YI   
Sbjct: 86  VELAKRLLLNSAAVTTLISLFVSVVVTCFIPELVTLV----GASGHTAELAESYLYILVP 141

Query: 147 SAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIVLDLLLVLGLGLKVEGAAIASVIA 206
           S P   L   L G L    +A+  M   +     N VLD + +    + +EGAA+ASV+A
Sbjct: 142 SLPFICLAMALGGALRAVGDAKLSMMSTLAGGGVNAVLDPIFIFLFAMGIEGAALASVLA 201

Query: 207 DYAGLLFGLLCVGR-YWRQHQLPAPFSFIPSLTKELSRLVALNRDIFLRSLCLQAVFSFM 265
             A  +      GR    +HQL   F+F      +L  + A+     L ++      +F+
Sbjct: 202 RIAVFII----AGRGVVVKHQLLGKFNF-SYFVADLKPIFAIAGPAMLTNIATPIGNAFV 256

Query: 266 TFQGAALGDDIVAANAVLMSFLMMISYGM-DGFAYAMEAMVGKAIGAKDDRQLRTAMISS 324
           T   A  GD  VA  AVL   L+ +++GM    + A+  +VG+  GA    ++R ++  +
Sbjct: 257 TRAIADFGDAYVAGWAVL-GRLIPVTFGMIFALSGAIGPIVGQNFGAGRFDRVRESLTKA 315

Query: 325 TFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATAEHYLPWLVAMPLIAVWCFLLDGVF 384
             + T+  +++SL+     S ++ +        A  E +  ++      +   F+ +  F
Sbjct: 316 IQFCTLYVVVMSLLLFLLKSQVVSLFDMKGDSAALIEFFCSYIAVFFTFSGILFVANASF 375

Query: 385 IGATKGK 391
               K K
Sbjct: 376 NNLGKAK 382



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 18  RQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTMISVTFWLLGFLRMS 77
           + + AIA P +L+NI  P+        I     A+  G   LG  +I VTF ++  L  +
Sbjct: 233 KPIFAIAGPAMLTNIATPIGNAFVTRAIADFGDAYVAGWAVLG-RLIPVTFGMIFALSGA 291

Query: 78  TTGLTAQAHGA----QNSQQLARVLLQGSVIALGLAALFLLFHRPVAELIFHFSDASSEV 133
              +  Q  GA    +  + L + +   ++  + ++ L  L    V  L     D+++ +
Sbjct: 292 IGPIVGQNFGAGRFDRVRESLTKAIQFCTLYVVVMSLLLFLLKSQVVSLFDMKGDSAALI 351

Query: 134 KTY 136
           + +
Sbjct: 352 EFF 354