Pairwise Alignments

Query, 544 a.a., ubiquinone biosynthesis protein UbiB from Vibrio cholerae E7946 ATCC 55056

Subject, 549 a.a., ubiquinone biosynthesis protein AarF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  629 bits (1623), Expect = 0.0
 Identities = 311/542 (57%), Positives = 398/542 (73%), Gaps = 1/542 (0%)

Query: 1   MKPAELKRLYRIVKVQLEYGLDELLPEHHLTRAPLLARKSLFWLRNQHADKALGDRLRLA 60
           M  A ++R Y ++K  L+YGLD++LP         LAR SLFW+RN+H DK+ G+RL+LA
Sbjct: 1   MTLASIRRGYHVIKTLLQYGLDDVLPPKMTPWYFTLARNSLFWIRNKHKDKSGGERLKLA 60

Query: 61  LQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAPLETW 120
           +QELGPV+IK GQM+STRRDL     A  LAMLQDKV PFDG  A+  IE EL AP+ET+
Sbjct: 61  MQELGPVYIKLGQMLSTRRDLLSDEWATELAMLQDKVPPFDGALARLAIEAELKAPIETF 120

Query: 121 FDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVARIVAKAL 180
           FDDF+  PLASASI+QVHTA LKSNG+ VVLKV+RP++  +I AD+ LM + A+++   L
Sbjct: 121 FDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTAKVIDYLL 180

Query: 181 PEARRLKPVEVVREYEKTLLDELDLRREAANAIQLRRNFENSEELYVPEVLTDFCNETVM 240
            E  RL+P EV+ +Y  T+L EL+L+ EA NAI+LR NF +S+ LY+P V  +FC   +M
Sbjct: 181 GEGNRLRPAEVIEDYRVTILGELNLKLEALNAIKLRNNFIDSDALYIPYVYEEFCYPRLM 240

Query: 241 VSERIYGIQVSDLAGLHANGTNMKLLAERGVSVFFTQVFRDSFFHADMHPGNVFVNPNHP 300
           V ERIYGI VSD+  L A GTN KLLAERGV +FFTQVFRD+FFHADMHPGN+F++  +P
Sbjct: 241 VMERIYGIPVSDIVALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRENP 300

Query: 301 ENPQWIGLDCGIVGTLNSEDKRYLAENFLAFFNRDYRRVAQLHVDSGWVPLDTNVDEFEV 360
           ENP +IGLDCGI+GTL+  DKRYLAENFLAFFNRDY R+AQL+++SGWV   T++  FE 
Sbjct: 301 ENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQ 360

Query: 361 AIRMVCEPIFAKPLCEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGLGRQLYP 420
           AI++VCEP+F KPL EISFGHVLL LF TAR F++ VQPQLVLL+KTLLY+EGLGRQLYP
Sbjct: 361 AIKVVCEPMFNKPLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYP 420

Query: 421 QLDLWQTAKPFLEKWMANQVGPQAFLHALKERAPLWFEKMPELPELLYDSLKQGRNLNQR 480
           QLDLWQTAKPFLE+WMA QVGP+A    +  + P W +K+PE PEL+YD+LK GR L   
Sbjct: 421 QLDLWQTAKPFLEQWMAEQVGPKAMFKKVSTKLPYWSDKLPEFPELIYDNLKLGRKLLSS 480

Query: 481 LDNLYQGYRQSKRQQGTGKFLFGVGATLVVCSAIWISNQLEPLAIGSATI-GVLCWLLSW 539
              +   Y + ++Q     +L    A L++C  +  +     L+     I G + W++ W
Sbjct: 481 QQQMLDKYLKYQQQAHKSNYLLITSAILLICGTLLFNQDATLLSPYVCLISGAVLWIIGW 540

Query: 540 RA 541
           R+
Sbjct: 541 RS 542