Pairwise Alignments

Query, 510 a.a., DNA recombination protein RmuC from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DNA recombination RmuC-like protein from Pseudomonas aeruginosa PA14

 Score =  385 bits (989), Expect = e-111
 Identities = 206/474 (43%), Positives = 310/474 (65%), Gaps = 26/474 (5%)

Query: 40  LEQQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRDKNEF---ELKQSHGKLMAVLEK 96
           L  QL++++    ++I  L E+L TAQ   D L+A  + +     +L + H +L   +  
Sbjct: 22  LAWQLQRRASLAEREIALLGERLATAQLAQDGLNAQLETSREAYQQLGERHARLSGEVAA 81

Query: 97  LRY-FEAVKQERQQYA--------------DELNQVRAAKAELESQLREQEARHQQQLVA 141
           LR   E + +ERQ+ +              +E+ ++ + +A L ++LREQ+  HQQ+L  
Sbjct: 82  LRREAELMGEERQRASQAEARWASERQGREEEVRRLASERAALAAELREQQESHQQRLTD 141

Query: 142 SQEKLQLLERAEERLKQQFEHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQV 201
                  L+ A + L+ QF  LA ++F+ +       ++Q L  +L PLKE+++ F+K+V
Sbjct: 142 -------LQSARDELRAQFAELAGKIFDEREQRFAETSQQRLGQMLDPLKERIQAFEKRV 194

Query: 202 NDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLTQALKGDNKQQGNWGEVVLARVLAE 261
            +S+  EA+ER +L  EL  LQ+LN ++ +EA NLT+ALKG  K QGNWGE+VL RVL  
Sbjct: 195 EESYQQEARERFSLSKELERLQQLNLRLGEEATNLTRALKGQ-KTQGNWGELVLERVLEH 253

Query: 262 SGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAETDSER 321
           +GL +G EY+TQVSL+   G+R+QPDV++ LP +KQVV+D+K++L AY++Y  A+ D  R
Sbjct: 254 AGLEKGREYETQVSLKGAEGERFQPDVLIRLPGDKQVVVDAKVSLTAYQQYIAADDDLLR 313

Query: 322 DSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAM 381
             AL++H+ +LRNH++GL  KDY +L+G+ SLD+VL+F+P+E AF  A+QA+P+L  DA 
Sbjct: 314 QQALKQHVTSLRNHVKGLSGKDYRRLEGLHSLDFVLLFMPIEAAFSTALQAEPNLFQDAF 373

Query: 382 EQNIILVSPTTLLVALRTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGAL 441
            QNI++VSPTTLL  LR ID+LWR ERQNQNA+ IAERA  LYDK  LFV+D++ +G  L
Sbjct: 374 AQNIVIVSPTTLLATLRVIDSLWRQERQNQNAREIAERAGSLYDKFVLFVQDLDEVGSRL 433

Query: 442 DKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIKRSIPQPLIERAQQAPDQE 495
            + +++Y  A NKL  GRGN I ++E  K LG    +S+P   ++RA  AP +E
Sbjct: 434 QQLDKAYAAARNKLTEGRGNLISRSEQLKLLGARASKSLPTDWLDRALVAPVEE 487



 Score = 42.0 bits (97), Expect = 5e-08
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 32  RYQLKTQLLEQQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRDKNEFELKQSHGKLM 91
           R+  + Q  E+++ + +   A    +L EQ  + QQ L +L + RD+   +  +  GK+ 
Sbjct: 102 RWASERQGREEEVRRLASERAALAAELREQQESHQQRLTDLQSARDELRAQFAELAGKIF 161

Query: 92  AVLEKLRYFEAVKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLER 151
              E+ R+ E  +Q   Q  D L +   A  +   +  +QEAR +  L    E+LQ L  
Sbjct: 162 DEREQ-RFAETSQQRLGQMLDPLKERIQAFEKRVEESYQQEARERFSLSKELERLQQLNL 220

Query: 152 AEERLKQQFEHLANQVFEHKT 172
              RL ++  +L   +   KT
Sbjct: 221 ---RLGEEATNLTRALKGQKT 238