Pairwise Alignments

Query, 510 a.a., DNA recombination protein RmuC from Vibrio cholerae E7946 ATCC 55056

Subject, 537 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  454 bits (1168), Expect = e-132
 Identities = 242/503 (48%), Positives = 350/503 (69%), Gaps = 23/503 (4%)

Query: 15  LVSAGATGVAIGWWVKQRY-QLKTQLLEQQLEQQSHWHAQQIQQLNE--QLTTAQQELDE 71
           L++    G+ IG  + QR  + + Q  +  LEQ+       ++Q+NE  +L+ AQQ++  
Sbjct: 15  LIAVAFLGLLIGALLNQRLTRSRWQQFKDDLEQE-------MRQVNEDAELSLAQQQI-- 65

Query: 72  LDALRDKNEFELKQSHGKLMAVLEKLRYFEAVKQERQQYADELNQVRAAKAELESQLREQ 131
              L D  + +L+    +L   +E L   EA+ +       +L+     + EL+  L + 
Sbjct: 66  ---LVDDKDSQLRLCQQRLEQKIEHLGKAEALAERVPSLEQQLSDSHRRQLELQLALSKS 122

Query: 132 EARHQQ-------QLVASQEKLQLLERAEERLKQQFEHLANQVFEHKTATVDVQNRQSLE 184
            A  Q        Q  + +EK+  LE AE RL+ QFE+LAN++FE ++     QN   LE
Sbjct: 123 NAMQQTIQAKADAQQESLREKIATLESAEVRLQTQFENLANRIFEERSENFKHQNANQLE 182

Query: 185 GLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLTQALKGDN 244
           G+L PLK+QLEGF++Q+ +S+NHE  ER  L H+L +L+ LN +M+++A+NLT+ALKGDN
Sbjct: 183 GVLGPLKQQLEGFRQQIRESYNHEQSERSALKHQLEHLRDLNLKMSQDAINLTKALKGDN 242

Query: 245 KQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKM 304
           KQQGNWGEV+L RVL ESGLREGHEY TQ  L++++GKR++PDVIVHLP+NK VVID+KM
Sbjct: 243 KQQGNWGEVILDRVLQESGLREGHEYHTQQDLKDDSGKRFKPDVIVHLPENKDVVIDAKM 302

Query: 305 ALVAYERYFHAETDSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEP 364
           +L++YERYF++E    R+ A+ EH+L++RNHI+GL QKDY +L G++SLDYVLMFIP+EP
Sbjct: 303 SLISYERYFNSEDPLVREQAINEHVLSIRNHIKGLSQKDYQRLHGLKSLDYVLMFIPIEP 362

Query: 365 AFQVAIQADPSLVNDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQLIAERASKLY 424
           AF +A++ DPSLVN A+EQNI+LVSPT LLVALRTI+N+WR E QNQ+AQ IA++A ++Y
Sbjct: 363 AFLLALEHDPSLVNFALEQNIMLVSPTNLLVALRTINNIWRYEYQNQHAQTIAKQAGRIY 422

Query: 425 DKLRLFVEDMEGLGGALDKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIKRSIPQPL 484
           DKL  ++EDME LG ALD A ++Y  AMNKL +G+GN +RQA   +QLGV+  + + + L
Sbjct: 423 DKLCGYLEDMEKLGRALDNAEKTYHSAMNKLSSGKGNLVRQAHLMQQLGVDTSKQLDKML 482

Query: 485 IERAQQAPDQENAPLVERHPIED 507
           +E+A      +++ + + + IED
Sbjct: 483 LEKALNEA-LDDSDVAQTNDIED 504