Pairwise Alignments

Query, 510 a.a., DNA recombination protein RmuC from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 85/400 (21%), Positives = 170/400 (42%), Gaps = 42/400 (10%)

Query: 119 AAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLKQQFEHLANQVFEHKTATVDVQ 178
           A   +L++ LR+Q   ++++L  S  +L++     + L Q  + L + + ++     ++Q
Sbjct: 28  AQAEQLQAALRQQMQENREELNRSIRELRM--EMTQTLNQNMQQLQDVLHKNMMTNGELQ 85

Query: 179 NRQ------SLEGLLTPLKEQLEGFKKQVNDSFNHEAKER-----HTLVHELRNLQR-LN 226
            ++        E L+   +++L+  +  V +       ER       +  +L N+Q+ L 
Sbjct: 86  RQKFDTMARQQEVLIKSTEKRLDDMRLMVEEKLQKTLNERIGQSFEIVRSQLENVQKGLG 145

Query: 227 EQ--MAKEAVNLTQALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRY 284
           E   +A++   L + L  + K +G +GEV L  +L +  +    +Y   V  + ++G  +
Sbjct: 146 EMKSLAQDVGGLKKVLS-NVKMRGTFGEVQLGALLEQ--MMSPEQYDANVKTK-KSGTEF 201

Query: 285 QPDVIVHLPQNKQ------VVIDSKMALVAYERYFHAETDSERDSALREHL-LALRNHIR 337
             +  + LP          + ID+K     YE+Y+ A      D+AL E     L   I+
Sbjct: 202 V-EFAIKLPGKDDANSTVYLPIDAKFPKDVYEQYYDAFEAG--DTALMESSGKQLETTIK 258

Query: 338 GLGQKDYHQLKGIQ---SLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLL 394
            +  KD H  K +    + D+ +MF+P E  +   I+    +     E  I++  PTTL 
Sbjct: 259 KMA-KDIHD-KYVDPPFTTDFAIMFLPFESIYAEVIRRTSLVETLQKEYKIVVTGPTTLG 316

Query: 395 VALRTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDKANQSYQGAMNK 454
             L ++   +R          I +R  +++  L     +    GG L+K  ++ Q A ++
Sbjct: 317 AILNSLQMGFR-------TLAIQKRTGEVWTVLGAVKTEFSKFGGLLEKVQKNLQSAGDQ 369

Query: 455 LVTGRGNAIRQAESFKQLGVEIKRSIPQPLIERAQQAPDQ 494
           L    G   R  E   +   ++     Q ++  A    D+
Sbjct: 370 LEEVMGKRTRAIERKLRQVEQLPHEESQRILPIADDGDDE 409