Pairwise Alignments

Query, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., SAM-dependent methyltransferase (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  219 bits (558), Expect = 4e-62
 Identities = 124/246 (50%), Positives = 162/246 (65%), Gaps = 9/246 (3%)

Query: 9   APQRAQELEQIAARWQLQAS-DDSPFALVLSEERLELRKLDEPKLGAIYVDWVEGAVAHR 67
           AP    + E  A R  L    DD  FAL + E  L+L++L     G + VD+VEG  AHR
Sbjct: 16  APAFQPQAEHWAERLGLPLQVDDGEFALQVGELGLQLQQLGPDAPGPVRVDFVEGGAAHR 75

Query: 68  RKFGGGKGQSIAKAAGLNKGVTPVVLDATAGLGRDAFVLASLGCRVQMVERHPVVAALLE 127
           R +GGG GQ IAKA G+ +GV P VLDATAGLG+DAFVLASLGC + ++ER P++ ALLE
Sbjct: 76  RLYGGGSGQMIAKAVGIAQGVRPRVLDATAGLGKDAFVLASLGCEMSLIERQPLIGALLE 135

Query: 128 DGLQRAKQDDEIGAWVSERISLLHASSHDALQQLASDPNFTSPDVVYLDPMYPHPENKKK 187
           DGL R  +D ++   V+ R+ LL  +S + ++    +P    P V+YLDPM+PH   ++K
Sbjct: 136 DGLARGAEDFDVAPIVA-RMRLLKGNSIEVMRDWEGEP----PQVIYLDPMFPH---REK 187

Query: 188 TALVKKEMRVFQSLVGADNDADALLEPALQLAQKRVVVKRPDYAPWLGNRKPSMAMETKK 247
           TALVKKEMR+F+ LVG D DA ALL  AL LA  RVVVKRP  AP +   KPS  ++ K 
Sbjct: 188 TALVKKEMRLFRPLVGDDPDAPALLAAALALATHRVVVKRPRKAPCIEGPKPSHGLDGKS 247

Query: 248 NRFDVY 253
           +R+D+Y
Sbjct: 248 SRYDIY 253