Pairwise Alignments

Query, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

Subject, 248 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  315 bits (808), Expect = 4e-91
 Identities = 165/243 (67%), Positives = 190/243 (78%), Gaps = 8/243 (3%)

Query: 16  LEQIAARWQLQASDDSPFALVLSEERLELRKLDEPKLGAIYVDWVEGAVAHRRKFGGGKG 75
           L QI ARW L  +D++ F+L+  E+ L L+K DEPKLG I VD+V GAVAHRRKFGGG+G
Sbjct: 13  LTQICARWDLTPNDNAEFSLLFEEDILTLKKRDEPKLGGIMVDFVSGAVAHRRKFGGGRG 72

Query: 76  QSIAKAAGLNKGVTPVVLDATAGLGRDAFVLASLGCRVQMVERHPVVAALLEDGLQRAKQ 135
           Q+IAKA GL  G TP V+D TAGLGRDAFVLASLGCRV ++ERHPVVAALLEDGL+RA  
Sbjct: 73  QAIAKAVGLKAGATPTVVDGTAGLGRDAFVLASLGCRVLLIERHPVVAALLEDGLRRAYL 132

Query: 136 DDEIGAWVSERISLLHASSHDALQQLASDPNFTSPDVVYLDPMYPHPENKKKTALVKKEM 195
           D EIG W+ +R+ L+H SS +AL  L        PDVVYLDPMYPH   ++K+ALVKKEM
Sbjct: 133 DGEIGPWMQQRMQLVHGSSLEALDNLED-----KPDVVYLDPMYPH---REKSALVKKEM 184

Query: 196 RVFQSLVGADNDADALLEPALQLAQKRVVVKRPDYAPWLGNRKPSMAMETKKNRFDVYVI 255
           RVFQSLVGAD DAD LL PAL+LAQKRVVVKRPDYA  L   +PS  +ETKKNRFDVYV 
Sbjct: 185 RVFQSLVGADTDADGLLAPALRLAQKRVVVKRPDYAEDLDGVRPSTRIETKKNRFDVYVK 244

Query: 256 AAM 258
           AAM
Sbjct: 245 AAM 247