Pairwise Alignments

Query, 261 a.a., ribosomal RNA small subunit methyltransferase J from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  297 bits (761), Expect = 1e-85
 Identities = 160/246 (65%), Positives = 185/246 (75%), Gaps = 8/246 (3%)

Query: 16  LEQIAARWQLQASDDSPFALVLSEERLELRKLDEPKLGAIYVDWVEGAVAHRRKFGGGKG 75
           LE +  RW L   +++ F LV  +  L L K DEPKL  I+VD+V GAVAHRRKFGGG+G
Sbjct: 22  LEAVCDRWGLVFDENALFELVFEDNCLVLNKRDEPKLKGIFVDFVSGAVAHRRKFGGGRG 81

Query: 76  QSIAKAAGLNKGVTPVVLDATAGLGRDAFVLASLGCRVQMVERHPVVAALLEDGLQRAKQ 135
           Q+IAKA GL +GVTP V+D TAGLGRDAFVLASLGC V MVER+PVVAALLEDGL+RA +
Sbjct: 82  QAIAKAVGLKQGVTPSVVDGTAGLGRDAFVLASLGCNVTMVERNPVVAALLEDGLRRAYE 141

Query: 136 DDEIGAWVSERISLLHASSHDALQQLASDPNFTSPDVVYLDPMYPHPENKKKTALVKKEM 195
           D +IG W+ ER+ L+H SS  AL +L         DVVYLDPMYPH   ++K+ALVKKEM
Sbjct: 142 DADIGPWMQERMRLVHGSSLTALAELGE-----QVDVVYLDPMYPH---REKSALVKKEM 193

Query: 196 RVFQSLVGADNDADALLEPALQLAQKRVVVKRPDYAPWLGNRKPSMAMETKKNRFDVYVI 255
           RVFQSLVGAD DAD LL PA+ LA KRVVVKRPDYA  L   KP+  +ETKKNRFDVYV 
Sbjct: 194 RVFQSLVGADLDADGLLAPAMALASKRVVVKRPDYAEDLDGVKPNTRIETKKNRFDVYVK 253

Query: 256 AAMSGE 261
           AAM  E
Sbjct: 254 AAMKSE 259